3300025344: Saline lake microbial communities from Deep Lake, Antarctica, in enrichment culture - Antarctic Deep Lake Metagenome VIREN14 (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300025344
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0114820 | Gp0116315 | Ga0208772
• Sample Name: Saline lake microbial communities from Deep Lake, Antarctica, in enrichment culture - Antarctic Deep Lake Metagenome VIREN14 (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 23608915
• Sequencing Scaffolds: 14
• Novel Protein Genes: 15
• Associated Families: 14

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division CPR1 → candidate division CPR1 bacterium ADurb.Bin160	1
All Organisms → Viruses → Monodnaviria → Trapavirae → Saleviricota → Huolimaviricetes → Haloruvirales → Pleolipoviridae → Betapleolipovirus	1
Not Available	10
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Haloferacales → Halorubraceae → Halorubrum → Halorubrum lacusprofundi	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Saline Lake Microbial Communities From Various Lakes In Antarctica
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake Enrichment → Saline Lake Microbial Communities From Various Lakes In Antarctica

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → saline lake → lake water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Hypersaline (saline)

Location Information

• Location: Deep Lake, Antarctica
• Coordinates
  • Lat. (^o): -68.5563
  • Long. (^o): 78.1877
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003128	Metagenome	506	Y
F007072	Metagenome	358	Y
F011984	Metagenome	285	Y
F047394	Metagenome	150	N
F058677	Metagenome	134	N
F064414	Metagenome	128	Y
F077915	Metagenome	117	Y
F081868	Metagenome	114	Y
F083694	Metagenome	112	Y
F086358	Metagenome	111	N
F094519	Metagenome	106	Y
F100062	Metagenome	103	Y
F100063	Metagenome	103	N
F100259	Metagenome / Metatranscriptome	102	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0208772_100257	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria	6674
Ga0208772_100363	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division CPR1 → candidate division CPR1 bacterium ADurb.Bin160	4359
Ga0208772_100972	All Organisms → Viruses → Monodnaviria → Trapavirae → Saleviricota → Huolimaviricetes → Haloruvirales → Pleolipoviridae → Betapleolipovirus	2026
Ga0208772_101212	Not Available	1740
Ga0208772_101232	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Haloferacales → Halorubraceae → Halorubrum → Halorubrum lacusprofundi	1715
Ga0208772_102057	Not Available	1193
Ga0208772_103689	Not Available	806
Ga0208772_105702	Not Available	618
Ga0208772_105789	Not Available	613
Ga0208772_106638	Not Available	558
Ga0208772_107133	Not Available	534
Ga0208772_107409	Not Available	523
Ga0208772_107486	Not Available	520
Ga0208772_107680	Not Available	511

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0208772_100257	Ga0208772_1002572	F047394	MTASTQPTETRAQTTNGSFQTDVSALQEMTERAVEILDSHGEPVTIARLVGTVVRLGARDEYRFETIVRVAQQYIDEECGGADR
Ga0208772_100363	Ga0208772_1003631	F081868	KKTENNKPVVSANSYGISTAIWDNTNKAGKEYQSISLNGSTKLPDGTYKNRTIFFPSDLENLINSLTELKEKADEAGIKTAFELKKE
Ga0208772_100775	Ga0208772_1007751	F086358	PSHYAREIALKQIETREYEDDNYDSRLRLWDELIGFTRYNVEVEYEITEPDGTCHERSHQGLYWHQSQTKLHNQRLDTLQRTNNAEVDSNPDKQGENRFDLLDITITPELRYTNLGPLIDTEWFVYNS
Ga0208772_100972	Ga0208772_1009723	F011984	MRPIICDCCQIRIDDSWAGPALVVKVHNGVDTDVSGDYCVDCAGDIADAIRSVIEDT
Ga0208772_101212	Ga0208772_1012121	F100062	AAEHGVVNMKREPMVDTLADMGVMPGDDPSGDTPEQSEPESFKDLSEDKQDDLRASVKTDPSETDFKQVRSLLETGEDYVALAGECLNRSEHEGETVGAKLTKDGLIPFCNGCEHSADDVTVERLSDTEQTVFRALRNDGMVSSKALATAED
Ga0208772_101232	Ga0208772_1012323	F100063	MSETCEVCGQFTGQTESFDLWIRGLDRRGEGDRIEIDVSGVSVGECCGLGVLQGPDETRVDRSYQRYLNGTPDGELRYVVMIRDEIETDSDTEEVEIDANTVQLHPITGNYLPESIDGYVWRIFGM
Ga0208772_102057	Ga0208772_1020573	F077915	MAVTDYYVAPTGNETSGLFELSKYIGVSATAGLFWPVMLLVIWIVAFLGFKQYSTSRAWTFASFFCSILGIFLAVLNLMAPKWMYLSIIMTLIGLVWLKLEAN
Ga0208772_103689	Ga0208772_1036892	F064414	MGMSDITSKLPFIGGEGGGSNIIYLLIGFAVLLICGFALWWFLKKRKTWNIKVEFKIPRNIKKVRTKEGTIKIIGTLNKEWGKGFYDAKKGSVFIKRKGKKAVAMKPFDVKQYLSTGNILTVVQTGIEDYRPIRDESYIELKDVNGKEDALVQAVIDTSESKSWKNTFERES
Ga0208772_105702	Ga0208772_1057022	F100259	MAQNYIGGGNSTALFAFEDMDGWGVAAASHTASDETYMPFGQGVEVTITRTNNAERVYGVGARNAVATINKQYGGEASVTGMVSNAYWLLGVLGANADGGTTGAYTHTYTEANILPSFTLSTSMELGTIDFTSVLIGNVINNCTLTAAVNEALKFTLETMYRYETVNTTFV
Ga0208772_105789	Ga0208772_1057891	F003128	MQIDVSASDIKSDRKADDRGRVTLGSEHAGKTVTVAVLEVEDEDDVRTDEYPH
Ga0208772_106638	Ga0208772_1066381	F058677	MNQINAEELFQIIGEQLMTIRKQNQELMRLQTEVTKLKPKEEVK
Ga0208772_107133	Ga0208772_1071332	F094519	MDMIKQPEQLTAGVTMIGTSSWGSQTGGIGSIMGSTWSSKIIFDAQPDRVLSKYFIEFNDLMGNNDVTIVIPKIGDVNLMGGRAGSIEGVARVLTKFDSADNITVNLTSADVKLGGCSVSFETASATRVSIIEMAHK
Ga0208772_107409	Ga0208772_1074091	F083694	MDKVEKLHKRQLARLLSHLEKTGQLTLELEKDLKRAYRFAFEDVATLIQGLDLENKNVEN
Ga0208772_107486	Ga0208772_1074861	F007072	MELSKIKKKGQLSLGDAPTVVLLVGLVFLVMATIAFIGEKYQGSLTEDSVAYNVTGDLQTEISNNTSIAGIILTISLVGIVLTILIGVFIGVRGGTSRV
Ga0208772_107680	Ga0208772_1076801	F007072	LLVGLVFLVMATIAFIGEKYGSSIADGKTLSATCNHSGNGGTGSVYTDCGTAYNTTVDLQTEIGNNTSIAGIVLTISLVGIVLTILIGVFIGVRGGTARV