3300025334: Saline lake microbial communities from Deep Lake, Antarctica, in enrichment culture - Antarctic Deep Lake Metagenome VIRDL14 (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300025334
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0114820 | Gp0116314 | Ga0208281
• Sample Name: Saline lake microbial communities from Deep Lake, Antarctica, in enrichment culture - Antarctic Deep Lake Metagenome VIRDL14 (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 6907677
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Predicted Viral	1
Not Available	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Saline Lake Microbial Communities From Various Lakes In Antarctica
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → saline lake → lake water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Hypersaline (saline)

Location Information

• Location: Deep Lake, Antarctica
• Coordinates
  • Lat. (^o): -68.5563
  • Long. (^o): 78.1877
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051583	Metagenome	144	N
F084902	Metagenome	112	Y
F102170	Metagenome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0208281_10546	All Organisms → Viruses → Predicted Viral	2487
Ga0208281_10957	Not Available	1076
Ga0208281_11280	Not Available	515

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0208281_10546	Ga0208281_105464	F051583	MDYTNPEDVANIDEPTRQQEIGLLSGLIDGKFVCVNHRGFLVNRTDNGSIELSRDGEVLGGRYYVTENNFAGLIEWLNAKAALYGETA
Ga0208281_10957	Ga0208281_109571	F084902	QLAGYEDGAGKGTYNATPTDIGYEIHKEDVLPAFREAYYSEAVNREI
Ga0208281_11280	Ga0208281_112801	F102170	MSDDDETVIVMTKGRVYHTDETCKRITDRAREWDLDEALNDGRYECGHCQADENLGSKHHGEHLATKLSKADPDEVAPTEFDRERASVSLAWFVAVWLAIMAASTFTGVMLYFAGVLL