3300025275: Marine microbial communities from the Deep Pacific Ocean - MP1649 (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300025275
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053074 | Gp0054788 | Ga0208057
• Sample Name: Marine microbial communities from the Deep Pacific Ocean - MP1649 (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 144170637
• Sequencing Scaffolds: 17
• Novel Protein Genes: 24
• Associated Families: 24

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Predicted Viral	1
Not Available	11
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote	4
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Deep Ocean Microbial Communities From The Global Malaspina Expedition
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: North of Tokelau, South Pacific Ocean
• Coordinates
  • Lat. (^o): -5.74
  • Long. (^o): -170.77
  • Alt. (m): N/A
  • Depth (m): 4017.73

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000245	Metagenome / Metatranscriptome	1468	Y
F001625	Metagenome / Metatranscriptome	661	Y
F002745	Metagenome	533	Y
F002874	Metagenome / Metatranscriptome	524	Y
F004881	Metagenome / Metatranscriptome	420	Y
F005608	Metagenome / Metatranscriptome	395	Y
F008720	Metagenome	329	Y
F013649	Metagenome	269	Y
F014899	Metagenome / Metatranscriptome	259	Y
F015491	Metagenome	254	Y
F016015	Metagenome / Metatranscriptome	250	Y
F024888	Metagenome	204	Y
F035075	Metagenome / Metatranscriptome	173	Y
F038419	Metagenome / Metatranscriptome	166	Y
F038848	Metagenome	165	Y
F043979	Metagenome	155	N
F066858	Metagenome / Metatranscriptome	126	N
F081449	Metagenome / Metatranscriptome	114	Y
F089050	Metagenome / Metatranscriptome	109	Y
F097512	Metagenome / Metatranscriptome	104	Y
F099450	Metagenome	103	Y
F099860	Metagenome / Metatranscriptome	103	Y
F101326	Metagenome	102	Y
F105490	Metagenome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0208057_1013711	All Organisms → Viruses → Predicted Viral	1620
Ga0208057_1022268	Not Available	1108
Ga0208057_1026120	Not Available	977
Ga0208057_1026400	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote	970
Ga0208057_1029612	Not Available	888
Ga0208057_1031251	Not Available	854
Ga0208057_1031289	Not Available	853
Ga0208057_1031846	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote	842
Ga0208057_1038210	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	734
Ga0208057_1045238	Not Available	647
Ga0208057_1045265	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote	647
Ga0208057_1047116	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote	628
Ga0208057_1049896	Not Available	602
Ga0208057_1051825	Not Available	586
Ga0208057_1053396	Not Available	573
Ga0208057_1058399	Not Available	536
Ga0208057_1062133	Not Available	512

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0208057_1003539	Ga0208057_10035391	F035075	LICGYDNAISVKYVNKKNQRSIWVIQKNIEDEEKWV
Ga0208057_1013711	Ga0208057_10137112	F004881	MSYTFFEPSGKPYQECTNPNDPEDKSLCVLVQDGSKFDGAIVRYTTFKLLEQELTGGEIACRYEYEIEVPPHAIKHKITDKEGKEFENKLGKWVIEILQKQMDKHAAKNRSTDTEKSNT
Ga0208057_1022268	Ga0208057_10222681	F002745	MKSFKGYLTEFAIQSTSDYVFNAGSDSSALKIPISGPMFKRIWPDTIRATVFHTTDLAGLERLKKLEGGKKSISAFFSMMSRYMETGVATGGDVHVVVEMDADVLVSARDDIMSEVDKQGRRWVMMSWFEYQTRERAKFSKIEKDLNTLIANLVKKHIPKDKEIQQTKHFGKDSGAVFEIWGNMKKHLKGDGRKIAAVIKDYFDGVEKIIKKNKEVMGDIFYGYTKSKRMTDNSWDEQIVNNIDIYKIHVIK
Ga0208057_1022268	Ga0208057_10222682	F000245	MKTFTRFKEDSFDASDKKMDAFVVKEIKKRKLAKFPVNATDDIKMRMKPNKPAFTFPSPISDMMIQVFLKKMLPSKGQPKGMMAFNYQLEDK
Ga0208057_1026120	Ga0208057_10261201	F101326	IKLYFVTDNQFTNLLSKVRKIYPTKQNLPNTTQSITDKSYTLADTARDIFYDFFVGTKKPLRQPKTRKPFLVEPTRYKSEIVIPNWNPFKAISFLASKAVAANQEAKGANFVFYQTLQGFRFVSIETLMLGGFRLFKEKYENGAAVAKDYPHLATNAILETATTDNTSHIPIYKDDPEIEEDMKPFVASYKYMPANMGESKQSSYESVTSFRLVDSFDTMKNVALGMYANRVITHDLIQMKIDRRDFHYVTPPSTISMIEADGSVSSKQNTEEGDKEKTQIDVSVSTEIGRLCSDNADFLGKPEAHISLVPTTFGQAGALNTGPK
Ga0208057_1026400	Ga0208057_10264001	F081449	TLSVDRHGQGKPTGKKLTVKIELHKVDPYKIWWIGEKTFTHRGQEETFVRFTIDQEGKQVGGFTYEKKKFVTPFGNMEVVNPNNDEPTGASSFESGTEESRYHPGDRR
Ga0208057_1029612	Ga0208057_10296123	F016015	MINVNKFENRIVKFKRIDSEGNISDKEAEVRRMDYDQAEDIPRSVTARLVDPLNFVITLGYDKSKKKFSGPLGTDIWESNFDIDDFITSSKMGTADRYMRS
Ga0208057_1031251	Ga0208057_10312512	F097512	DFSPILKDARAEGYEGLSQVARNILKGKYYTPTDEEVRGF
Ga0208057_1031289	Ga0208057_10312891	F013649	MSSILEKELSILERLPSSRRMREHDEAGKRSKKFKKLRKEHFREDWDVDLWD
Ga0208057_1031846	Ga0208057_10318462	F008720	MKVVQTEDRSFVRDLHSKALINTDRVALENHRKKRQIEIQQAQQWQQMETKVEELNNMRNEILEIKGLLQEVLN
Ga0208057_1038210	Ga0208057_10382101	F038848	LIIKDYMDGMEKVIKKNIDTFSSAMLSYAKKRSTDLSWDEQVVNNIKVKTAHFFKLPIPIAQTDDQIEMSEKQQELIEFTESKGWSTKMWDAAIELEAYTREVAKKELGK
Ga0208057_1038952	Ga0208057_10389521	F066858	GERSEDMNAPSTVPGTAINPSFQPRESSMRFCLAYTAVDATELLNTANKLLLTASVGENPTNVNTGTIIIPPPRPIIEPNRPATNPSGMSQILSINVLG
Ga0208057_1045238	Ga0208057_10452381	F024888	MGTSTIDLKNVHKIVADEVNARIEIDRKGKTPDEWAQFKGFKDWLGYAAWSRHTGGFYEMAVMMIKAHWKEEDPVEFARQKKIQKDQSLREHSYINLPPEAWPTSVPNKNDFASRFIGNKKKKWQPVHKSNFTAEELEVI
Ga0208057_1045265	Ga0208057_10452651	F099860	VNAMEAVGAEWDTIQLNSTDGAPASNAGEKVILEDASESDDGDMTFLQMEKQTTGTQMNYYFTIAGSDGAGELSVARQAITLNSSTFKEAGDTETADSGIMQQVSASIANAAVTMA
Ga0208057_1047116	Ga0208057_10471161	F015491	VPARPQVTPRKWSKKTARIFDKQFDRFLYDELYVPTKKAWGENDIVKYERNMYGDSK
Ga0208057_1047116	Ga0208057_10471162	F005608	MKKATIEVLEEGELIFGSPTVGKYFVRRYEDGEEMGGGFFKTKKEAVTHVREYKKSE
Ga0208057_1049896	Ga0208057_10498962	F105490	MKGGQGKTLRRQGAIERIEPMIEKYEKILPAEKELLKLMRKEKDLPPDNIPTMEKKVKQFEQKLERAKITLENTKKN
Ga0208057_1050103	Ga0208057_10501032	F099450	PVIRTIDKEFASEVACWNYYEGDVGESKFGTQHLDHQGNPPTKDFHFGKMDHREYPIRTYRGKDGQGSVWLTCDIKGRYKDL
Ga0208057_1051825	Ga0208057_10518251	F089050	MVELNHDVVSFNSDTLIKGGHGVLVNVYVTKVGSGSNKVEFRNGTTGSAPIVFTIFT
Ga0208057_1051825	Ga0208057_10518252	F001625	TISSSDWTNANVRKTLSWQAALVSKLRVYAIKVTFGSGDNYATNGVSADLKEGRISTLVAVIPTYSNISREVVYDKANEKIKILEVGGSTGSAMTELANNSSATNSKIFEFLVIGY
Ga0208057_1052473	Ga0208057_10524731	F014899	MAEEEQLIDFGFSAVTADEYDRDQTDGEDTGGGGSASPEALSAMDAKIEQIMAHLAAQSKEEDDGWSSSEVAQSLDEKLAQISSKVDEVLVLERDEERAQTTADILFQLNNATEATSATSKKSGEVVGKQDEIMKFLQEMAPKVDKILKLESLEALLEQSSGKLDALTE
Ga0208057_1053396	Ga0208057_10533962	F038419	MMLVQAIIVTWIMMTTPEPCPQEYLNLGGDVIEYCELTPAGLGRQWSLKE
Ga0208057_1058399	Ga0208057_10583991	F002874	MKEKIDLSLNRSLEELESSYWEFVEATEGEDSSGWSKSVQEDLSALEGYLM
Ga0208057_1062133	Ga0208057_10621331	F043979	MALTISSSDWTNANVRKTLSWQAALVSKLRVYAIKVTFGSGDNYATGGVSADLKEGRISTLVAVIPTYSNISREVVYDKANEKIKILEVGGSSGSA