3300025252: Marine microbial communities from the Deep Atlantic Ocean - MP2633 (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300025252
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053074 | Gp0053993 | Ga0208328
• Sample Name: Marine microbial communities from the Deep Atlantic Ocean - MP2633 (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 120013549
• Sequencing Scaffolds: 3
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1
Not Available	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Deep Ocean Microbial Communities From The Global Malaspina Expedition
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Unclassified → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Northeast of Antigua and Barbuda, North Atlantic Ocean
• Coordinates
  • Lat. (^o): 20.0
  • Long. (^o): -52.63
  • Alt. (m): N/A
  • Depth (m): 4002.69

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000060	Metagenome / Metatranscriptome	2944	Y
F005608	Metagenome / Metatranscriptome	395	Y
F045803	Metagenome	152	Y
F095625	Metagenome / Metatranscriptome	105	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0208328_1035407	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	629
Ga0208328_1042465	Not Available	539
Ga0208328_1044681	Not Available	515

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0208328_1031875	Ga0208328_10318751	F000060	MAQKFNTEFNYRYQVIGDTPWEKIKTLNGFLEGRIRALALEEVSKLKHQAKLSKLNYLKNGGEGLEHEILELKAEILEADSHQGSLDEAFELTQDEIKILKKLIKELYVIAEPTRIKGYTDEEMFEANAANEFTVNMGREIQSEMIANGRPSAARIRNAMSNPHTWNALKQVGLIPKA
Ga0208328_1035407	Ga0208328_10354072	F045803	FFSLIIPNLSFSNDLIERIKKIEKSVSDAEDAFAIGSKGHFQSLEKLLEVRKKLVKAKDMFAEIKTYENKLETAHYRNTTIRILDDLEPLTKYIIEHSGLDPKH
Ga0208328_1042465	Ga0208328_10424651	F095625	MITSESLKGILRDFGVHKYSTDWEKLVENLMSEFEKSYNEGYSFCKRESELVEKAAESLS
Ga0208328_1044681	Ga0208328_10446812	F005608	MKTTKIEILKEGELIFGSPTAGKYFVRRYEDETEMGGGFFKTKKEAETHVREYKKSE