3300025213: Marine microbial communities from the Deep Indian Ocean - MP0960 (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300025213
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053074 | Gp0054435 | Ga0208468
• Sample Name: Marine microbial communities from the Deep Indian Ocean - MP0960 (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 96499077
• Sequencing Scaffolds: 10
• Novel Protein Genes: 10
• Associated Families: 10

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	2
Not Available	6
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Deep Ocean Microbial Communities From The Global Malaspina Expedition
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: East of Madagascar, South Indian Ocean
• Coordinates
  • Lat. (^o): -27.98
  • Long. (^o): 63.25
  • Alt. (m): N/A
  • Depth (m): 3504.69

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021319	Metagenome	219	N
F033215	Metagenome / Metatranscriptome	178	Y
F041257	Metagenome / Metatranscriptome	160	N
F054935	Metagenome / Metatranscriptome	139	N
F069480	Metagenome	124	N
F071320	Metagenome / Metatranscriptome	122	N
F074984	Metagenome / Metatranscriptome	119	N
F082562	Metagenome	113	N
F089571	Metagenome	109	N
F094002	Metagenome	106	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0208468_1003573	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	3116
Ga0208468_1003938	Not Available	2921
Ga0208468_1005307	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	2399
Ga0208468_1016360	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	1104
Ga0208468_1017735	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1042
Ga0208468_1023205	Not Available	857
Ga0208468_1025285	Not Available	804
Ga0208468_1028141	Not Available	744
Ga0208468_1033498	Not Available	655
Ga0208468_1047078	Not Available	510

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0208468_1003573	Ga0208468_10035731	F089571	MFIIYLDKENERKMLKNIIVIVFSVLFLVVPASSQHVQQKYAITDKDEKVILNDNGTWEYAEEDKQNYYYKKVPPKTYNYEFKSQTWEERLEQAAHEYWRIRAHAELEQLGIPVTRYDPTTSDVPLYLKLEGGRIRTDFDSFTPLAKGEVIDISGLWDPDKGDNPTLKIQGKLFLQITMKLDDQKKLFSQYNQRNYIPIPDDFQRILEFRDSLDVISLGMHDYNRDNTHIWPGIPHSFLYAPPGSYYDPNNPPIIHGDGFPYIQRGHLTLARREIPMTNSVYDNLLKRIDNLEGHGPIKIRYDMGKGIIETVTFEEVWLKINPYNGDPTHILKKVSLNKLE
Ga0208468_1003938	Ga0208468_10039381	F071320	VISWEATVSQGWEKIARDDKLYSMASRVPVFDADIPLRESVFFLSNPSRCFRNNPDRLYCSSDCRS
Ga0208468_1005307	Ga0208468_10053076	F021319	EVGAARFIEIPSATTINGTKIRPPPIPNRLDIIPAKKLAPAEKTSKRRDTSMGFSSIFLLRNMYDAEEIRISANKILKMSGDISEDTNAPSIVPGTAIKPSFQPSESSIRFCLAYMVVDATELLNTANRLLLTANVGENPANVNTGTIIIPPPRPIIDPNIPAINPSGINQSSSSMLYRY
Ga0208468_1016360	Ga0208468_10163603	F082562	YRSNTEFKPQKQRLRLLTVIKYIIGILITLSNILFAQVSEDSNNCFLNIELSLIHPILGGFGGTIGIEKNKFSYGLNSFGTKLNHMTKHYLLVNAEELAVYNWGIELYSDYYLKQNHAGIFLGLISSLNGFQFNDTPIPQTILVVYSVPRIGYRAYLPKKLKSFYFQFSLTTHFKVWNNKKKILYQEIDTKSIFLISQLTLGMKI
Ga0208468_1017735	Ga0208468_10177352	F041257	DVVDPRSEQADGPFDHERFKTLTVLAHAAGRVMDRYAIKGFEGFTKRQADWACKLQSFFNLSNTFETLVLLLFTFQFSQNERFDLEMGKTEPIDRSHPLSQALMAWVWWDPSSETSRVDRFYPWEYGEERTIRMVAIASGLLPEPIDVTSPSDVPPSPPRTQ
Ga0208468_1023205	Ga0208468_10232052	F094002	KKLESSNIYASGALECPLPRSPNITTAITINTPIAAPNAPIDASAIVEMLRLHHI
Ga0208468_1025285	Ga0208468_10252851	F074984	MNNKTNTAEVILFNILYMFMNCDFDVLDKEAEIIENTMRELTDEEKKTIESQIKDNENIISKGFDKIKSRTMEMGKLINETKDSEGIKKSFIEVIKAMILIDGVIHKNEKTMFNELCKLWDVES
Ga0208468_1028141	Ga0208468_10281411	F033215	VVFEVLNEAPLANVAPIGRLRVPPVEERVPAVALIPPLRDKSALPVTIFSPAASRVTGCAMLNPAIALSSVKAKLARSSVPTDREALSSIVEFAAKRRVVELSGNTPPKFCVPDTSRMPPESVSALAFVVRVVFFVFRVAPVSDKAFCSTNVVSGIEILVPDGALAPETRVIVPPEEFSDALSVNANAPERVRLPAPVSRAIPDKARASFTFR
Ga0208468_1033498	Ga0208468_10334981	F054935	MKRRTFIKYTSLISTAVFLPLAKLFGAKPKPNKSLKTFISDLPLQGSPFRKNCDSLDNYNDISFKAMMEDIVHYRTPAKLRDKLILGIKTEDD
Ga0208468_1047078	Ga0208468_10470782	F069480	KKPKLCVPCLIYIELIDRIYILESRNNIKRVEGNAGQILDEAPKNKPYNTVKTVFFSVFKPVVFL