3300025194: Marine microbial communities from the Deep Pacific Ocean - MP1494 (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300025194
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053074 | Gp0054538 | Ga0208205
• Sample Name: Marine microbial communities from the Deep Pacific Ocean - MP1494 (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 49107993
• Sequencing Scaffolds: 8
• Novel Protein Genes: 8
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Calditrichaeota → Calditrichia → Calditrichales → Calditrichaceae → Caldithrix	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1
Not Available	4

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Deep Ocean Microbial Communities From The Global Malaspina Expedition
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: South of Fiji, South Pacific Ocean
• Coordinates
  • Lat. (^o): -25.49
  • Long. (^o): -179.52
  • Alt. (m): N/A
  • Depth (m): 2147.76

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002753	Metagenome / Metatranscriptome	532	Y
F013190	Metagenome / Metatranscriptome	273	Y
F050430	Metagenome / Metatranscriptome	145	N
F071317	Metagenome / Metatranscriptome	122	N
F082562	Metagenome	113	N
F089571	Metagenome	109	N
F092695	Metagenome / Metatranscriptome	107	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0208205_100606	All Organisms → cellular organisms → Bacteria → Calditrichaeota → Calditrichia → Calditrichales → Calditrichaceae → Caldithrix	4495
Ga0208205_100892	All Organisms → cellular organisms → Bacteria	3565
Ga0208205_104826	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	1323
Ga0208205_111868	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	770
Ga0208205_118609	Not Available	592
Ga0208205_119609	Not Available	573
Ga0208205_124262	Not Available	505
Ga0208205_124334	Not Available	504

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0208205_100606	Ga0208205_1006062	F089571	MLKNIIVIVFSVLFLVVPASSQHVQQKYAITDKDEKVILNDNGTWEYAEEDKQNYYYKKVPPKTYNYEFKSQTWEERLEQAAHEYWRIRAHAELEQLGIPVTRYDPTTSDVPLYLKLEGGRIRTDFDSFTPLAKGEVIDISGLWDPDKGDNPTLKIQGKLFLQITMKLDDQKKLFSQYNQRNYIPIPDDFQRILEFRDSLDVISLGMHDYNRDNTHIWPGIPHSFLYAPPGSYYDPNNPPIIHGDGFPYIQRGHLTLSRREIPMTNSVYDNLLKRIDNLEGHGPIKIRYDMGKGIIETVTFEEVWLKINPYNGDPTHILKKVSLNKLE
Ga0208205_100892	Ga0208205_1008924	F071317	LKKITAVGLITLFAGVTAAPLIHLDECNMPCCAGLATSCCDMDQEVACPTISDCGSSIFVLIVSGPFHKSELKSSDSISQRFVTDLDIFKIETNYIACFGNYDPGPMASLNLPLLI
Ga0208205_104826	Ga0208205_1048261	F082562	MNKLILSILITLSTVLFAQASDSSNNYFFNIELSLIHPILGGFGGTVGIEKNHFSYGLNSFGTKLNHMTKHYLLENAEELAVYNWGVELYSDYYFKQNHTGLFLGLILSLNGFRFNDIPNPQTILVLYSAPRIGYRLCLPKKLKSFYFQYSLTTHFKVWDDEKKFLYQEIDTKSIFLLSQLTLGVKIPGRQKDVLDRIKRMKGIK
Ga0208205_111868	Ga0208205_1118682	F092695	LTIEGRKTAKVDGGYDGGKYIKKVNNFAIPCYSWWRGKDLNLRPSGYEFYVPPYYWLISTYIN
Ga0208205_118609	Ga0208205_1186092	F050430	MDKKLKENLIVGTKIVGMLFFLIVLITTLVWPGVDTLANLFLTKE
Ga0208205_119609	Ga0208205_1196091	F013190	ILENSSMRTPNLMSLSQLYFSNAELGQEMSISATCDGSIPLNEMPSTVASKVASSTKVDIAEIIAFHSLEVFVLAENSNLIK
Ga0208205_124262	Ga0208205_1242621	F002753	TPAVFEIESVKLTDSDRFTPDVFDMESVNDTDSDRFTPAAFETESVNDIDSDRFTPAAFAIESVKLTDSDRFTPAVFDIESVNDTDSVRFTPAAFETESVNDIDSDRFTPAAFAIESVKLTDSDRFTPAAFAIESVKLTDSDRFTPAAFETESVKLTDSVRFTPAVFD
Ga0208205_124334	Ga0208205_1243341	F002753	ESVNDTDSDRFTGAVFDIESVKLTVSDRFTPVDFATESVKLTDSDRFTPSVFETESVKLTVSDRFTPAAFEIESVKLTVSDRFTPAVFEIESVNNTVSDRFTPAAFEIESVNNTVSDRFTPAAFEIESVKLTVSVRFTPAAFEIESVKLTVSDRFTPAAFEIESVKLT