3300025190: Marine microbial communities from the Deep Atlantic Ocean - MP0326 (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300025190
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053074 | Gp0054020 | Ga0208472
• Sample Name: Marine microbial communities from the Deep Atlantic Ocean - MP0326 (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 45328359
• Sequencing Scaffolds: 2
• Novel Protein Genes: 2
• Associated Families: 2

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Deep Ocean Microbial Communities From The Global Malaspina Expedition
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: East of Recife, Brazil, South Atlantic Ocean
• Coordinates
  • Lat. (^o): -9.12
  • Long. (^o): -30.19
  • Alt. (m): N/A
  • Depth (m): 4001.48

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013190	Metagenome / Metatranscriptome	273	Y
F105349	Metagenome / Metatranscriptome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0208472_117137	Not Available	639
Ga0208472_122815	Not Available	528

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0208472_117137	Ga0208472_1171371	F105349	YEYKFVTQDLKWNLEFLSKNDVQLNCAFQNWAHLPKEGYDQIIYLDNDIFIFEDTGSPPIVDFGLVCRLGDQIQYAKYYCGNNSLWWNSGVMLMSQKRCKHLSSWMLDYIPRAREFPIFRDLPREESLITEYCKKYKPTKLDPIWNTMPPQTPIPMYSDAKIIHLLGASKLNTLLKCPKEIQKIIMKNIVVSEKITA
Ga0208472_122815	Ga0208472_1228152	F013190	TCDGSIPLNEMPSTVASKVASSTKVDIAEIIAFHSLEVFVLAENSNLIK