3300025189: Marine microbial communities from the Deep Atlantic Ocean - MP0144 (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300025189
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053074 | Gp0054474 | Ga0208704
• Sample Name: Marine microbial communities from the Deep Atlantic Ocean - MP0144 (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 26552052
• Sequencing Scaffolds: 5
• Novel Protein Genes: 6
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	4
All Organisms → Viruses → environmental samples → uncultured marine virus	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Deep Ocean Microbial Communities From The Global Malaspina Expedition
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: West of Cape Verde, Atlantic Ocean
• Coordinates
  • Lat. (^o): 14.52
  • Long. (^o): -26.0
  • Alt. (m): N/A
  • Depth (m): 4005.01

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002078	Metagenome / Metatranscriptome	596	Y
F012125	Metagenome	283	Y
F015611	Metagenome / Metatranscriptome	253	Y
F034189	Metagenome / Metatranscriptome	175	Y
F036736	Metagenome / Metatranscriptome	169	Y
F046426	Metagenome / Metatranscriptome	151	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0208704_101384	Not Available	1431
Ga0208704_105375	Not Available	650
Ga0208704_106987	Not Available	566
Ga0208704_107351	Not Available	550
Ga0208704_108205	All Organisms → Viruses → environmental samples → uncultured marine virus	517

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0208704_101384	Ga0208704_1013844	F036736	VDKLNEMLIGMLAIIGGFVTKRIFSNHDALTDRISALEKVMLTKEDISSLERNMEMVVEHLINLKK
Ga0208704_105375	Ga0208704_1053752	F015611	METTYKKFMEANVKSWKDMKDRDVLKAAEKFLKKMKPGNVLGYTLAHGEFTIFKNEKEWEKSAKDKTHGDMKWVRVE
Ga0208704_106987	Ga0208704_1069871	F034189	MTTNLATLASNNGQIIKSGLSDGRRAKFLPSVVGVVYDWLRYECH
Ga0208704_107351	Ga0208704_1073512	F012125	MSNTRYSVMHPDGGKDSFFSAGKPKNLPRFYFLVLAGIFL
Ga0208704_108205	Ga0208704_1082051	F002078	AMFEGQGWFAIVGQIVLVFTAVTGALPDRFVQKIPVLGTLWPIFNWLAGNVFNNINHPKGMAAKAEVEEEIDKAKAKVRQRVGMPDVLDGM
Ga0208704_108205	Ga0208704_1082052	F046426	VLVCLMFLTGCSILPQLIAPAANFAIGFYDANDYYSKECLWYDEVKLNAETKKWFMDNTPPEGVARDLSVVSRNNDIYKEVCKEHKSVADK