3300025187: Marine microbial communities from the Deep Atlantic Ocean - MP2968 (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300025187
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053074 | Gp0053863 | Ga0208466
• Sample Name: Marine microbial communities from the Deep Atlantic Ocean - MP2968 (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 48537498
• Sequencing Scaffolds: 1
• Novel Protein Genes: 2
• Associated Families: 2

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Deep Ocean Microbial Communities From The Global Malaspina Expedition
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: South of Funchal, North Atlantic Ocean
• Coordinates
  • Lat. (^o): 32.08
  • Long. (^o): -17.26
  • Alt. (m): N/A
  • Depth (m): 4002.6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026708	Metagenome / Metatranscriptome	197	Y
F027203	Metagenome	195	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0208466_115406	Not Available	614

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0208466_102836	Ga0208466_1028361	F027203	KILSDIPKIPEARIVGLSRVNVPIEVERLAFTLNSLIPFSYNS
Ga0208466_115406	Ga0208466_1154061	F026708	FFFSNNKTNGATAKKPTKNRVELKVNGPILSIPVSWAINVVPQIRVQTIKQTKDIVFFIGLDLYSQFVGKIFSEAFF