3300025180: Marine microbial communities from the Deep Indian Ocean - MP1374 (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300025180
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053074 | Gp0054357 | Ga0208835
• Sample Name: Marine microbial communities from the Deep Indian Ocean - MP1374 (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 81816124
• Sequencing Scaffolds: 10
• Novel Protein Genes: 10
• Associated Families: 9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosotenuis	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → unclassified Thaumarchaeota → Thaumarchaeota archaeon SCGC AC-337_F14	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1
All Organisms → cellular organisms → Archaea	1
Not Available	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Deep Ocean Microbial Communities From The Global Malaspina Expedition
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: South of Port of Lincoln, Great Australian Bight, South Indian Ocean
• Coordinates
  • Lat. (^o): -39.23
  • Long. (^o): 135.19
  • Alt. (m): N/A
  • Depth (m): 3995.55

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006423	Metagenome	373	Y
F012354	Metagenome	281	Y
F013190	Metagenome / Metatranscriptome	273	Y
F037770	Metagenome	167	Y
F042383	Metagenome / Metatranscriptome	158	Y
F050430	Metagenome / Metatranscriptome	145	N
F052659	Metagenome / Metatranscriptome	142	N
F066858	Metagenome / Metatranscriptome	126	N
F076187	Metagenome	118	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0208835_107216	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosotenuis	1805
Ga0208835_107965	All Organisms → cellular organisms → Bacteria	1693
Ga0208835_108152	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	1672
Ga0208835_108631	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → unclassified Thaumarchaeota → Thaumarchaeota archaeon SCGC AC-337_F14	1611
Ga0208835_109984	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1468
Ga0208835_118545	All Organisms → cellular organisms → Archaea	977
Ga0208835_119639	Not Available	939
Ga0208835_119742	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	936
Ga0208835_120589	Not Available	909
Ga0208835_133118	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote	640

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0208835_107216	Ga0208835_1072163	F037770	TPSPKFKASRPLAFNADTMVDLPEPGMPVRQTISFAKMKLFTDSSL
Ga0208835_107965	Ga0208835_1079652	F042383	MKGIKMETTYNNFPTPDDFYEGPSDEELKKIEEDLERYSN
Ga0208835_108152	Ga0208835_1081521	F066858	LDIIPAKKLAPAEKTSKRCDTSMGFSSIFLLRNMYDAEEIRISANKILKMSGDISEDTNAPSIVPGTAIKPSFQPSESSIRFCLAYMVVDATELLNTANRLLLTANVGENPANVNTGTIIIPPPRPIIDPNIPAINPSGINQSSSSMLYRY
Ga0208835_108631	Ga0208835_1086311	F013190	LENSSMRTPNFMSLSQLYFSNAELGQEMSISATCDGSIPLNEMPSTVASKVASSTKVDIAEIIAFHSLEVFVLAENSNLIK
Ga0208835_109984	Ga0208835_1099842	F052659	TRSAVFIDGRLISSIPELNYQTIDKLQQGGVPDKVSWMKPSLRGRLRLVKLQAQERNLTIEDLNQSIRSKWVIFWAEV
Ga0208835_118545	Ga0208835_1185454	F076187	PDGLVSVAITHFFEFISTEKFFENFKTSRNVKSFPNIPLIPDTDIFNASNLDTLFINSER
Ga0208835_119639	Ga0208835_1196391	F076187	PALTVSVIICPDGLVSLAITHFFEFISTEKFFENFKTSRNVKSFPKIPLIPDTDIFNASNLDTLFINSERKWLVPR
Ga0208835_119742	Ga0208835_1197421	F050430	NIMDNKLKENLIVGTKIVGMLFFLIVLITTLVWPGGVDTLANLFLTKE
Ga0208835_120589	Ga0208835_1205894	F012354	RINPVANIPKPIPIAKKAIDILNNVGLPVFLNPIYEIVPITTPIKSPTKFRIISRKNSNYADSVTVLNKVSEQVF
Ga0208835_133118	Ga0208835_1331183	F006423	EKTEYYLDPSKDNTEKYVANDGDYWYVGRVGMKGGSSFLKFVAAHGKDSYFESGKLKKVTPKEIEKDATKSPSIINTVDFKKLYKK