3300025169: Marine microbial communities from the Deep Indian Ocean - MP1140 (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300025169
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053074 | Gp0054695 | Ga0208333
• Sample Name: Marine microbial communities from the Deep Indian Ocean - MP1140 (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 13770270
• Sequencing Scaffolds: 4
• Novel Protein Genes: 4
• Associated Families: 2

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → unclassified Opitutae → Opitutae bacterium	1
Not Available	1
All Organisms → Viruses → unclassified viruses → Virus sp.	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Deep Ocean Microbial Communities From The Global Malaspina Expedition
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: South Indian Ocean
• Coordinates
  • Lat. (^o): -29.65
  • Long. (^o): 92.99
  • Alt. (m): N/A
  • Depth (m): 2402.15

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033465	Metagenome / Metatranscriptome	177	Y
F043982	Metagenome / Metatranscriptome	155	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0208333_100202	All Organisms → Viruses → Predicted Viral	2484
Ga0208333_100298	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → unclassified Opitutae → Opitutae bacterium	2069
Ga0208333_100907	Not Available	1107
Ga0208333_102325	All Organisms → Viruses → unclassified viruses → Virus sp.	703

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0208333_100202	Ga0208333_1002022	F033465	MAEFLLYTLLFLCIIAMIGENSNPRGMNIFWYKVRVKLKEYWKALREYDSGNNDGNGKF
Ga0208333_100298	Ga0208333_1002982	F033465	MEFIFIPLLACILLMIGELSNPRGMNIFWYKLNVIRENYFKELTRYDSGNNKGNGKHSRI
Ga0208333_100907	Ga0208333_1009072	F033465	MAEFILYTTLFLCIIAMIGENSNPRGMNIFWYKVGVKLKEYWKALKEYDSGN
Ga0208333_102325	Ga0208333_1023252	F043982	CMHQFLLYSVIFVSCISLFLALIACARVGKFINSTAGLDWSSVANITGDLATLKKTIQTLNNRMNGMHSPKIAEQELMMQLLNKQQNQQVNGKIQGG