3300025116: Hot spring microbial communities from South Africa to study Microbial Dark Matter (Phase II) - Sagole hot spring metaG (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300025116
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0111485 | Gp0138776 | Ga0209207
• Sample Name: Hot spring microbial communities from South Africa to study Microbial Dark Matter (Phase II) - Sagole hot spring metaG (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 354346899
• Sequencing Scaffolds: 10
• Novel Protein Genes: 11
• Associated Families: 10

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	2
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → unclassified Planctomycetia → Planctomycetia bacterium 21-64-5	1
Not Available	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → hot spring → spring water
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: South Africa: Limpopo
• Coordinates
  • Lat. (^o): -22.5304
  • Long. (^o): 30.6814
  • Alt. (m): N/A
  • Depth (m): 1.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001564	Metagenome / Metatranscriptome	670	Y
F010100	Metagenome	308	Y
F018543	Metagenome / Metatranscriptome	234	Y
F020532	Metagenome / Metatranscriptome	223	Y
F024422	Metagenome / Metatranscriptome	206	Y
F035198	Metagenome / Metatranscriptome	172	Y
F042634	Metagenome	158	Y
F051242	Metagenome	144	Y
F053823	Metagenome / Metatranscriptome	140	Y
F093898	Metagenome / Metatranscriptome	106	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0209207_1001459	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	10916
Ga0209207_1030831	All Organisms → cellular organisms → Bacteria → Proteobacteria	1305
Ga0209207_1034310	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	1212
Ga0209207_1036159	All Organisms → cellular organisms → Bacteria	1167
Ga0209207_1043195	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1028
Ga0209207_1054201	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	877
Ga0209207_1060877	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → unclassified Planctomycetia → Planctomycetia bacterium 21-64-5	809
Ga0209207_1090352	All Organisms → cellular organisms → Bacteria	625
Ga0209207_1125842	Not Available	511
Ga0209207_1129022	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	504

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0209207_1001459	Ga0209207_10014599	F051242	MKEDDPSKANDEKSLKLTVCKPEDQAFQRLHLCKYLSELYESAEEENKSSVEKKKA
Ga0209207_1030831	Ga0209207_10308312	F093898	MMRFLLARAVNPSTTLLEGLRDWNKFAAALREPPRKRRRYQADSWDAFLS
Ga0209207_1031898	Ga0209207_10318982	F035198	MKIFIEIKSIRYFLIKIILAMVVFLFLNYNSYIYYRVGLTINYGYVF
Ga0209207_1034310	Ga0209207_10343103	F035198	SNKINYLFVLKIFIEIKTVRYFFIKVMLAVIVFLFLNYNRYIYYRVGLTINYGYVAVYAIRIVLLL
Ga0209207_1036159	Ga0209207_10361593	F001564	MSGEWPERPSLRFLIHWALRRNELCDPGLCPDAPDDGGRCDHCPLDKLDAAQSSEMGVLLRRALDIRAALKLGVRIGLDEIRADEFQSLVVLEEERERLEQMRLADR
Ga0209207_1043195	Ga0209207_10431952	F010100	VEQLVEEQPLQEELAVLLNLPPLEKAKADIIRLTFLLLHLGQVIFSEELNTSFSNSCSHCLQ
Ga0209207_1054201	Ga0209207_10542011	F053823	MFTINPLDHNTKGTIDIIINSKSRIKKIIQKIKNRKETGNTLTLKESKPHSNPSDLIIFDLTNKLPTPITKG
Ga0209207_1060877	Ga0209207_10608771	F018543	MSSRKEKMPNKGAAANRRPAGQADGAGNLLATVAADRAFPAAVAELCR
Ga0209207_1090352	Ga0209207_10903522	F042634	MADALRAGYIEANEAGMEFLRYLPLSAMLRVLPWTAGGELFSFNCADLAEWPPALDRCFGRRVVNAYHIPVVPPRPGLGVFFNRCGARHNVVVSWIEGVVEPDDAARIIEVVRGEMGWTRTP
Ga0209207_1125842	Ga0209207_11258422	F020532	MKQPASKRKKLDYPEETEGSRIAAKIRKLASKLTPEEEAEYIRRGMAKIYGGQPKEISGTGH
Ga0209207_1129022	Ga0209207_11290221	F024422	MSLDYQKGAWPAWNLEPENGVPVPCALGQPWVNEDTQITLEKLRIPRTDPWGKPLPGEPEDPVLARLRRDPAD