3300025092: Hot spring microbial communities from Little Hot Creek, USA to study Microbial Dark Matter (Phase II) - LHC4sed_matched (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300025092
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0111485 | Gp0127786 | Ga0209822
• Sample Name: Hot spring microbial communities from Little Hot Creek, USA to study Microbial Dark Matter (Phase II) - LHC4sed_matched (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 233126515
• Sequencing Scaffolds: 34
• Novel Protein Genes: 34
• Associated Families: 15

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	26
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → unclassified Nitrososphaeria → Nitrososphaeria archaeon	1
All Organisms → cellular organisms → Archaea → TACK group	1
Not Available	5
All Organisms → cellular organisms → Archaea	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Hot Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → hot spring → sediment
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: USA: California, Little Hot Creek
• Coordinates
  • Lat. (^o): 37.6906
  • Long. (^o): -118.8442
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004454	Metagenome / Metatranscriptome	437	Y
F006925	Metagenome	362	Y
F020112	Metagenome	226	Y
F024925	Metagenome / Metatranscriptome	204	Y
F025877	Metagenome	200	Y
F038537	Metagenome	165	Y
F051554	Metagenome	144	Y
F064214	Metagenome	129	Y
F074155	Metagenome	120	Y
F078228	Metagenome	116	Y
F079345	Metagenome / Metatranscriptome	116	Y
F080880	Metagenome / Metatranscriptome	114	Y
F089858	Metagenome	108	Y
F091320	Metagenome	107	Y
F102093	Metagenome	102	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0209822_1006537	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	4814
Ga0209822_1006892	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	4624
Ga0209822_1007334	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	4424
Ga0209822_1008460	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	3952
Ga0209822_1011105	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	3172
Ga0209822_1012071	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	2968
Ga0209822_1012563	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	2874
Ga0209822_1015801	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	2382
Ga0209822_1018589	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	2075
Ga0209822_1019396	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	2005
Ga0209822_1019609	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → unclassified Nitrososphaeria → Nitrososphaeria archaeon	1988
Ga0209822_1021786	All Organisms → cellular organisms → Archaea → TACK group	1819
Ga0209822_1022709	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1755
Ga0209822_1023239	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1719
Ga0209822_1025517	Not Available	1585
Ga0209822_1026835	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1516
Ga0209822_1029668	Not Available	1387
Ga0209822_1030052	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1371
Ga0209822_1040943	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1053
Ga0209822_1041481	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1040
Ga0209822_1043526	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1000
Ga0209822_1045363	Not Available	964
Ga0209822_1056223	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	804
Ga0209822_1056457	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	800
Ga0209822_1056493	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	800
Ga0209822_1057830	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	784
Ga0209822_1061884	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	739
Ga0209822_1066367	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	695
Ga0209822_1072006	Not Available	646
Ga0209822_1078319	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	599
Ga0209822_1086712	Not Available	543
Ga0209822_1087034	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	541
Ga0209822_1089708	All Organisms → cellular organisms → Archaea	526
Ga0209822_1094124	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	502

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0209822_1006537	Ga0209822_10065372	F004454	LSRDFRRTVIEVREDLHREVRKLALLNDLRIYQLANAIIEDFLKDEQRVKTLIRRLKFEVGGPVH
Ga0209822_1006892	Ga0209822_10068923	F038537	MHRTVYFWCDLYPLLMRFCREHNVPINKIVNLAVQSFLGGCDVVELRLQARLDCLLREEARLRRVCNAMLRSGSYLPGYVRRVLREPGRSLGHLPDAQRPLKALNPREERVFRRIVARREQIAREIAELSEQLLRDVKPFRLKPEPRRSRSRRRLCDKRNSPEMGEEVKS
Ga0209822_1007334	Ga0209822_10073343	F025877	MPGIEETENTFRYRVQEPEKFDKFRVKPITEGVKITVGRVKGTNRWEVQNYIFDKKRFKDRESVKNWLEKHLKSEIQTLLDFKAWNEWRKRFLRAYLQISNIA
Ga0209822_1008460	Ga0209822_10084601	F006925	FGREAELRKKWMRMWERLGVRILNMPKWMHEIVLEDINTAVRNRIAIMEMIQNAKRNR
Ga0209822_1011105	Ga0209822_10111051	F074155	LWGKLVSRDGEVVCSRCGLVWSVENSADYVPFPEHESFEGGGAHFEGHWQPGNTLAFLKGLGDPALANSRGKGEALMRVLAKSPNGAEDLGLRARQVKSMVEWEDPPQLRRVLSRISLLLTQMGQRENWLLADYVGNLARKIVAFKLLTGQMVKANVGDAVAAYATEKFGLKVKPQGLEADADDLELVRMLDKLKERRNPHAKKVELPSVMGKI
Ga0209822_1012071	Ga0209822_10120711	F074155	VAANLLSFDFIRGKLSTEQLEDLAVSLGVCLECGGNLVVRDCEVVCSRCGLVWAFENTADYVPFPEYEEASNFDGSRFEGHWQPCNTLVFLNGLGDPALANSRGKALMHVLAKSPNGAADLGLRARYVKTLVEWEDPPQLRRVLSRISLLLTQMGQRDNWLLANYAGNLARKTVAFKLLTKQPVSYRLGDAIIAHTIEKFGLKANPPSLKVETEDLQLIRQLENATQKSKRPKPTYQASFSNNNNSKLTEEGINFKGY
Ga0209822_1012563	Ga0209822_10125632	F004454	LSKDFRRTVIEVREDLHREIRKLALLNDLRIYQLANAIIEEFLKDEQRVKTLIRRLRFEVGGPLH
Ga0209822_1015801	Ga0209822_10158013	F038537	MIVRVYFWKDLAPLLKRFCREHNIALNRVINLAVQNFIGTSNVEELKLCAKLNQLLREEAELRRVCNAMLRSGSYLPGYVQRVLREPGRSLTYLPDPQRPLKALNPREERVFRKIAARREQIAREIAEIQEQLLRDVKPFRLKPDLRLSRSCTWQNKLEGGEKAEW
Ga0209822_1018589	Ga0209822_10185891	F025877	MPGLEEGVTVWRYRVQDPDRFDKFRVKDLGNGVKITLGRVKGTDRWEIQNYMFDKTRFKDRESVRKWLEKHLKSEAQLLLDFRAFNEMRRRFLRAFI
Ga0209822_1019396	Ga0209822_10193963	F079345	MLSVALGLELEGLSTLQRKLLVELLQKRYPHYWSRFVSPRYGWQSQKEALEEFLQNHGTELVREFAKAGLHGNGRKTARRSGVHVQG
Ga0209822_1019609	Ga0209822_10196095	F089858	MEWVEYLVRLRFHVDGFYPEKLTKEYVEGEVRRRLSVPGLEEEGLMEIIVSEKGVDGSLNIPVKRGELWVEELGDGRFSINLNDPDDPRITCVEVRIVREDLEEAIRAKGVKYVILGDIPGMGKARFMRVRRRVGEAVEEGE
Ga0209822_1021786	Ga0209822_10217863	F102093	MPAKSEHKIMKHGTSGVVVIPKPYRDYHNLQPGADVTVLYDSLLLIIPKSLEPILQEKQALIDELLGQQRKGEQKNNE
Ga0209822_1022709	Ga0209822_10227094	F038537	MLVRVWFWRGLYPLLRRFCKEHGVAFNRVVNLAVQSFLGGCDVEELRLQARLDCLLREEARLRRVCNAMLRSGSYLPGYVQRVLREPGRSLGHLPDAQRPLKALNPREERVFRRIAARREQIAREIAELSEQLLRDVKPYRLKPEP
Ga0209822_1023239	Ga0209822_10232392	F074155	VVCSHCGLVWSVENSTDYVPFPEHESSDGGEGSRFEGHWQPGNTLAFLKGLGDPTLANSRGKGKALMRVLAKSPNGAVDLGLRARYVKTLVEWEDPPQLRKVLSRISLLLTQMGQRENWLLADYTGNLARKIVAFKLLTCQTVNANVGDAVVAYAIEKFGLKVKPPDLKADADDLELARTLDKVKDKWNPQAKKRIATPSLT
Ga0209822_1025517	Ga0209822_10255174	F064214	MKMSLKSDLRVLVKSAEDLAYALRDTLDVLADHERRIKRLEEKLGFLADVETRVVGRAVAGGRGE
Ga0209822_1026835	Ga0209822_10268351	F074155	MAANLLSFDFIRGRLSPEQLEDLAVSLGICLECGGNLVVRDCEVVCSRCGMVWGLENTADYVPFPEYEEAGNFDGSRFEGHWQPCNTLAFLKGLGDPALANSRGRALMRVLAKSPNGAVDLGLRARYVKTLVEWEDPPQLRRVLSRISLLLAQMGQRENWLLANYAGNLARKTVAFKLLTKQPVGYRLGDAIIAHTIEKFSLKASPPNLKVENEDLQLIRQLENITQKP
Ga0209822_1029668	Ga0209822_10296683	F006925	VEVSVLENFGREAELRKKWMRMWERLGVRILNMPKWMQEIVLEDINTAIRNRIAIMEMIQNA
Ga0209822_1030052	Ga0209822_10300522	F020112	MVSKAFRKCVELVEEMLSRGFRLQISQTEVERLIKIGIGADKRTVQKYVRMLTEDLGFLRTAAKNPFGTAIYSIDVPAIEQFVSQHLKEKLRQLRLSDIRLKQDEDLKEVNVQRG
Ga0209822_1040943	Ga0209822_10409431	F080880	MSIHLHTTITKKANDILEELAKTYGTKSRALEKALETLLRVDKVGSCDDCAIKAKINEQIKLREALDLTSISRRNLDSLLEIALGNKTIEDFVKEQKADAKNTIEILKSSISWKSPSNFKEFLMVLEEIRNLTNMYDIPSYSEIDNIAILRPKVFKRLPVIVAFHVATILEGIGVYFDIRVMGEDIAVKMVRPEIYPLRRKEFGEFLEQQIEKELANVTPGLFKNTLMLVGPAFMNWAEKHLEGPITDLGNLLEDARIALGVDEFPKEPKDFVKALLSAFVKMNWFKQAKVLMGKDENVLELVFQASSTTTTRI
Ga0209822_1041481	Ga0209822_10414812	F074155	MACLVGLDFIRSRLSGELLEVLALSLELCLSCGGKLVSRDGEVVCSRCGLVWSVENSADYVPFPEHESSDGEGTHFEGHWQPGNTLAFLKGLGDPALANSRGKGKALMRILAKSPNGAADLGLRARQVKSMVEWEDPPQLRRVLSRISLLLTQMGQRENWLLADYVGNLARKIVAFKLLTGQMVKANVGDAVVAYAVEKFGLKVKPQGLEADADDLELVRMLDKLKERRNPHAKKVELPSVMGKI
Ga0209822_1043526	Ga0209822_10435261	F074155	MACLVGLDFIRSRLTGELLEVLALSLELCLSCGGKLVSRDGEVVCSCCGLVWSVENSAFYVPFPEHESFEGGGAHFEGHWQPGNTLAFLGLGDPALANSRGKGKALMRVLAKSPNGAEDLGLRARQIKTLIEWEDPPQLRRVLSRISLLLTRMGQRENWLLADFTGKLARKIVAFKLLTCQTVWANVGDAVVAYAIEKFGLKVKPPDLKADADDLELVRTLDKVKDKWNPQAKNR
Ga0209822_1045363	Ga0209822_10453631	F078228	FTMSIPDAMYAALEKERQKRKLGTIQELIRFIIAEYLKEKGI
Ga0209822_1056223	Ga0209822_10562231	F074155	GEGSRFEGHWQPGNTLAFLKGLGDPALANSRGKGKALMRVLAKSPNGAEDLGLRARQVKTLVEWEDPPQLRRVLSRISLLLTQMGQRENWLLADFTGKLARKIVAFKLLTGQTVWANVGDAVVAYAVEKFGFKVKPQGLEADADDLELVRMLDKLKERRNPHAKKVELPPILEKI
Ga0209822_1056457	Ga0209822_10564571	F080880	AKTYGTKSRALEKALETLLRVDKVGSCDDCAIKAKINEQTKLREALDLTSISRRNLDSLLEIALGNKTIEDFVKEQKADAKNTIEILKSSISWKPPSNFKEFLMVLEEIRNLTNMYDIPSYSEIDNIAILRPKVFKRLPVIVAFHVATILEGIGVYFDIRVMGEDIAVKMVRPEIYPLRRKEFGEFLEQQIEKELANVTPGLFKNTLMLVGPAFMNWAEKHLEEPITDLGNLLEDARIALGVDEFPKEPKDFVKALLSAFVKMNWF
Ga0209822_1056493	Ga0209822_10564931	F051554	MQLRYYVPFKAVQPSTTEQAQYPIREQLIVIEGVAIDTSVNKNKWQVPLEDLDYIVETLKGAQLRVDHAESALMIVGKVVDSWRDGDRVLFRAEVGDERLIDKIIRGYVDHVSIQVDSDEVECSKCKRSTRKEGRLVHLCPGAWEVVRKPKVRELSIVASPAYENTAFQPVGFYAAMNEAQWGAIIETLCKAGVLESAQSSVK
Ga0209822_1057830	Ga0209822_10578302	F079345	MLPVALGLELDGLSTLQRKLLVELLQKRYPQYWSRFVSPRYGWQSQKEALEEFLQNHGTELVKEFAKAGLHGNGRKTARRSGVHVQV
Ga0209822_1061884	Ga0209822_10618841	F074155	MACLVGLDFIRSRLSGELLEVLALSLELCLSCGGKLVSRDGEVVCSRCGLVWSVENSADHVPFPEHESSDGGEGSRFEGHWQPGNTLAFLKGLGDPALANGRGKALMRVLAKSPNGAVDLGLRARQVKTLVEWEDPPQLRRVLSRISLLLTRMGQRENWLLADYTGKLARKMVAFKLLTGQMVKANVGDAVVAYAIEKFGLKVKPPDLKADADDLELVRTLDKVKDKWNPQAKNR
Ga0209822_1066367	Ga0209822_10663671	F024925	QRVLIESMFRELGYEITTTTFQNLLSFKLKLLEKPVLEPLPRKKLMQTLIEGMSCNSVEEAFAIEKEQLDELFPEDYPWTIREVGERIIDMYRELGIEVEIEYFEGGFTLKYKSCPYYKLVKTGQKTWLCSLRKKTIEYIISRVSHGKKGKIKIIKSLLQNEHPCEYAIFLTGFLEKEEKAESQE
Ga0209822_1072006	Ga0209822_10720062	F025877	MPGLEEGVTVWRYRVQDPDKFDKFRVKDLGNGVKITLGRVKGTDRWEIQNYMFDKERFKDRESVRKWLEKHLKSEAQLLLDFRAFNEMRRRFLRAFIEIARID
Ga0209822_1078319	Ga0209822_10783193	F064214	MNSKSDLKLLVKSAEDLAYALRDTLDVLADHERRIKRLEEKLGFLADVEMRV
Ga0209822_1086712	Ga0209822_10867122	F025877	MPGLEEGVTVWRYRVQDPDKFDKFRVKDLGNGVKITLGRVKGTNRWEIQNYMFDKERFKDRESVRKWLEKHLKSEAQLLLDFRAFNEMRRRFLRAFIEIARID
Ga0209822_1087034	Ga0209822_10870341	F038537	MLVKVWFWKGLYPLLRRFCREHNVPFNKVVNLAVQSFLGSVDVEEVRLHARLDALMREESRLRKIQNTMLRSGSYLSGYVQRTLREPGRPVSLVRDGQVPLKALNPKEERVFRKIAARREQIACEIAELSEQLLRDVKPFRLKPDFKRGKRGK
Ga0209822_1089708	Ga0209822_10897081	F091320	FDPHGTLAKRLRQNPLLKVNFTKGRIDITKDLEEIYENASSWKETNKLKLLVVLDETRLLKAKNLVYCINELGKRGVGFLLITQYSTSIPAEIRNVGTYFIMSAMSETEIQRFKEITLHPSSKLITRLPKAMSYIFSPYWYPEPFFVKHRKI
Ga0209822_1094124	Ga0209822_10941241	F079345	MLSEALGLELDGLSVLQRKLLLEVLHRYPHYWSRFASPKYGWQSRKETLEEFLQNHGTELVKEFAKAGLHGNGWKTARSGVHVQG