3300025089: Hot spring microbial communities from Jinze hot spring, China to study Microbial Dark Matter (Phase II) - JNZ 20120812A (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300025089
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0111485 | Gp0127790 | Ga0209394
• Sample Name: Hot spring microbial communities from Jinze hot spring, China to study Microbial Dark Matter (Phase II) - JNZ 20120812A (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 167229564
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	2
All Organisms → cellular organisms → Archaea	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Hot Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → hot spring → sediment
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Baoshan, Yunnan, China
• Coordinates
  • Lat. (^o): 25.4413
  • Long. (^o): 98.46
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051554	Metagenome	144	Y
F064214	Metagenome	129	Y
F091320	Metagenome	107	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0209394_1030973	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	969
Ga0209394_1041642	All Organisms → cellular organisms → Archaea	702
Ga0209394_1044113	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	657

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0209394_1030973	Ga0209394_10309733	F064214	SEKGDLKVLAKSAEDLAYALRDTLDVLADHERRIKRLEEKLGFLADVESRVVEKAVAGGHVE
Ga0209394_1041642	Ga0209394_10416422	F091320	DPHGTLASRLKPNPLLEINFTKGKVDISNNLERIYEEASNWPETNELRLLIVLDETRLLKAKNLVYCVNELGKRGVGFLLITQYSTSIPPEIRNVGTYFIMSAMSETEIQRFKEITLHPSSKLITRLPKAVSYVFSPYWYPEPFFIKNRKVGR
Ga0209394_1044113	Ga0209394_10441131	F051554	EGSAEYSLKEKLINIEGVAIDTSVNKNKWQVPREDLQHIVESLKGAQLRVDHAESALMVVGKVVDAWIDGERVLFRAEVGEEKLIEKILRGYVSHVSIQVDSDEVECSKCKRQTRRDGMLIHLCPGAWEIVHKPRVRELSIVASPAYDNTEFKPLGFYAAMNDAQWNAIVETFTKAGLLETSKSSQSSPNVDGDVGSKAESLQEPEQKPVLKTPQNEV