3300025074: Freshwater bacterial and archeal communities from Indian Creek, Illinois, USA - JTO16cm metaG (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300025074
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0111485 | Gp0154770 | Ga0209209
• Sample Name: Freshwater bacterial and archeal communities from Indian Creek, Illinois, USA - JTO16cm metaG (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 7346705
• Sequencing Scaffolds: 5
• Novel Protein Genes: 7
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	5

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater biome → bayou → fresh water
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: USA: Indian Creek, Illinois
• Coordinates
  • Lat. (^o): 41.6655
  • Long. (^o): -87.5437
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001989	Metagenome / Metatranscriptome	607	Y
F026811	Metagenome / Metatranscriptome	196	N
F046199	Metagenome / Metatranscriptome	151	N
F053090	Metagenome / Metatranscriptome	141	N
F058683	Metagenome / Metatranscriptome	134	N
F102145	Metagenome / Metatranscriptome	102	N
F104443	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0209209_100714	Not Available	1076
Ga0209209_100912	Not Available	969
Ga0209209_101958	Not Available	659
Ga0209209_102243	Not Available	611
Ga0209209_102916	Not Available	528

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0209209_100714	Ga0209209_1007141	F053090	VGLKIKYQFDEELMDPYITAKPKSNEDYELPAKKFKITDTKKISILEYSSVQLPVSPFIDYLEKYSKSFVDQCLTYNNSNKKTD
Ga0209209_100912	Ga0209209_1009121	F026811	GGTSCTRGRNSEWMESQGLTARGREGGIGVMGERRRALEGNEFAHGGRGSLERYGGLPRVVILTPEGGQLINIGIGRGYMFSVISQEAAARYALHRSMFSGSLVLAGPAGQEVRAIGHCGVAIPQEKAADGNILIFVFIVDKLEEVYETPYGGLERWHMQLAEEDEKYMRWMRTAQPGDRPYCELTLEEVTLDPARVSRSTWEFRVCKGRQMTETVWLTAVRAWNMPVSRLSADAATRLGLTEKPNDWCQVRPCNAAGRQLDGFLAKIASVLEIAPPGYPTEERPREMSFRRPDVVIGTKDWESVEGFLRNVEPDKMAELKE
Ga0209209_101925	Ga0209209_1019251	F058683	IGPILFADDNLNPLSIESANDLQPIINLYNQYTTVSGLNINIRKTTALCINTSPRVIQGLNQMGIETPETCKHLGLHLGKNIEDTMEITMRNTEPKRIKRRILGTTPPTDILHRALLINTALIPIYNHIFMALPVQKEMTKRLHQEILDFLWTKQHDGETIQKRRLVAKDRIPASFNRGGLQVPHPDDTAEGLHLNLLQKIQNKIRLPHRYPPSHLPAILE
Ga0209209_101958	Ga0209209_1019581	F046199	QETYYIVKNNFLESTKEIWFEWLLRPFLYYNREKFFQTYEISKEFDFNYITPYNFKRPIFFRRSAPPPSNKTAYLSIFCPVSYKEIQLSYKNKYEQTTTVKYGWTMFSICSYDYLDLSQWSICTTQKPNEITLVSCNKPNFTMYILNDNRVPMSLLNLGLSSLYQNKLNSALNLTKYVVPKTLSQQAPPCYLFHINSRDLSIEYHGRCNCCGYFISSHI
Ga0209209_102243	Ga0209209_1022431	F102145	MMVSYKIHVLKILAEKMASEKQEATETLLYNFEYPMITECGAVKITDHHVFLQFPEKPTVHVEHAVKLRRNITLYVENGQCFSLDWLPIQTVTDFFRVKEMIEKCLQSYSYLLDNKTHFSPHTFSVNPINYYESLTTGFTTNSFSLSCFEHTFDTCIQLSVINKECDKKEIPLHFQLCIGKHVVFCTERDLKCV
Ga0209209_102416	Ga0209209_1024161	F104443	ASDEIQTLRATGVARISSLGASTPPGDIEERFPLAAGWTARLERPAEDVDLLVGLDNQRWMPRHVSSSLMGGDNLRLMQSVLGPTCMLMGRATVTAPAEANQGSRDAPEAGARRAREAPARTGWRERGEWRVRRPANPEMGCLRRMLAMAVLLTVGATRGAAFKAFDCNNASAPIEQYSLLDPEPCGNMQKVHAVE
Ga0209209_102916	Ga0209209_1029161	F001989	KMAQEARQTALKHTHKLPRRLWNEDKEKSHSTVRGRPQSGGECGSSCKERRSLWKEELTSLSTLVGTVATLLAVITPSEGVEIGGSPGERSLLKTEPGMENILIMDYWMVLPIIVMVVTSLIMRVQKHLGETWRPGEDGPILDKVGGANLPLDGGGTSTTDREKN