3300025056: Freshwater bacterial and archeal communities from Indian Creek, Illinois, USA to study Microbial Dark Matter (Phase II) - 3A3 metaG (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300025056
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0111485 | Gp0154760 | Ga0209315
• Sample Name: Freshwater bacterial and archeal communities from Indian Creek, Illinois, USA to study Microbial Dark Matter (Phase II) - 3A3 metaG (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 15559117
• Sequencing Scaffolds: 4
• Novel Protein Genes: 4
• Associated Families: 1

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
Not Available	3

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater biome → bayou → fresh water
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: USA: Indian Creek, Illinois
• Coordinates
  • Lat. (^o): 41.6655
  • Long. (^o): -87.5437
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F090615	Metagenome / Metatranscriptome	108	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0209315_100936	All Organisms → cellular organisms → Bacteria → Proteobacteria	2266
Ga0209315_101708	Not Available	1280
Ga0209315_103881	Not Available	619
Ga0209315_104785	Not Available	533

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0209315_100936	Ga0209315_1009364	F090615	TDPSLIAALRVRKGWLRPDSSIVDKAAAEGLKKLGVLLCPPPDPDGKSIPERRFIDIATEYLKAVPQARLLIEESVVEHQASWDPDKVYVERTDADIHGNLVTAIKIANGERLRAAKAKPAAGS
Ga0209315_101708	Ga0209315_1017083	F090615	MRALQLAAPEPTDPSLIAALRVRKGWLRPDSPIVDKAAAEGLKKLGVLLCPPPDPDGKSIPERRFIDIATEYLKAVPQARLLIEESAVEHQASWDPDKVYVERTDADIHEEMVTAIKIANGERLRAARAKASAGS
Ga0209315_103881	Ga0209315_1038812	F090615	SLIAALRVRKGWLRPDSPIVDKAAAEGLKKLGALLCPPPDADKRSATVKQINEVATEYLKAVPQTRLLIEESAVEHQASWDPDKVYVERTDADIHENLVTAIKIANAERLRAAEAKAAAG
Ga0209315_104785	Ga0209315_1047851	F090615	RKGWLRPDSSIVDKAAVEGLKKLGVLLCPPPDPEGKSIPAKLFNEIAAEYLKTVPQTRLLIEESAVEHQAFWDADQPYIDQSDEDIHEEMVTAIKMANADRLRAARAKASAGS