3300025053: Groundwater microbial communities from Rifle, Colorado - Rifle Oxygen_injection C3 (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300025053
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053054 | Gp0055715 | Ga0208374
• Sample Name: Groundwater microbial communities from Rifle, Colorado - Rifle Oxygen_injection C3 (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 187662623
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil Microbial Communities From Rifle, Colorado, Usa
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Soil Microbial Communities From Rifle, Colorado, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Subsurface (non-saline)

Location Information

• Location: Rifle, Colorado, USA
• Coordinates
  • Lat. (^o): 39.534762
  • Long. (^o): -107.782602
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017253	Metagenome	242	Y
F050966	Metagenome / Metatranscriptome	144	Y
F100657	Metagenome / Metatranscriptome	102	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0208374_1000066	All Organisms → cellular organisms → Bacteria	74715
Ga0208374_1003458	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	3910
Ga0208374_1051095	Not Available	841

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0208374_1000066	Ga0208374_100006648	F100657	MIYFINSHKEIMIMTQITISYTTSVFTPAGWRNETVTATVEVISPKRGRVLCVQDIGGNGNSGYGSRTGAKRQAYHVGGIAMREQGKIKNLSACCIL
Ga0208374_1003458	Ga0208374_10034586	F017253	MNIMLVRLRHSLAPNVGSYTQGRIAGDFLSSRKAARAERYTPKTT
Ga0208374_1051095	Ga0208374_10510951	F050966	MRENLMSGSRWQGMKTRHGDGTEALSEEMESNGSATPKSRRHPL