3300025051: Groundwater microbial communities from Rifle, Colorado - Rifle Oxygen_injection B3 (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300025051
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053054 | Gp0056926 | Ga0208961
• Sample Name: Groundwater microbial communities from Rifle, Colorado - Rifle Oxygen_injection B3 (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 179926548
• Sequencing Scaffolds: 4
• Novel Protein Genes: 5
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1
Not Available	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophobacteraceae → unclassified Syntrophobacteraceae → Syntrophobacteraceae bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil Microbial Communities From Rifle, Colorado, Usa
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Soil Microbial Communities From Rifle, Colorado, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Subsurface (non-saline)

Location Information

• Location: Rifle, Colorado, United States
• Coordinates
  • Lat. (^o): 39.53
  • Long. (^o): -107.78
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006861	Metagenome / Metatranscriptome	363	Y
F017253	Metagenome	242	Y
F050966	Metagenome / Metatranscriptome	144	Y
F059103	Metagenome / Metatranscriptome	134	Y
F102634	Metagenome / Metatranscriptome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0208961_1001624	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	7165
Ga0208961_1002365	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	5442
Ga0208961_1057308	Not Available	730
Ga0208961_1069197	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophobacteraceae → unclassified Syntrophobacteraceae → Syntrophobacteraceae bacterium	647

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0208961_1001624	Ga0208961_10016243	F017253	MNIMLVRLRHSLAPNVGSYTQGRIAGDFLSSRKAARAERYTPKTTAAALDG
Ga0208961_1002365	Ga0208961_10023651	F006861	MVAHSPLHRSQRAVFPHWALASGDDAKSHQGIGVTY
Ga0208961_1003102	Ga0208961_10031024	F059103	VSATPRPWLNLRLPPLDGATAAWLLDLCGHLQTALWREYGEAIEAHWSATEPDQPIYGPLQPPLRKKS
Ga0208961_1057308	Ga0208961_10573081	F050966	MRENLMSGSRWQGMKTRHGDGTEALSEEMESNGSATPKSRRHPLTLPADKW
Ga0208961_1069197	Ga0208961_10691971	F102634	MEETIKKRIELEGYGMLDGEFIQNELGWFCREVNGLRWNFREWGDQAAMDTPEEAALYLLSLDLDDTDPDS