3300025037: Marine viral communities from Cariaco Basin, Caribbean Sea - 24_WHOI_OMZ (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300025037
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0067852 | Gp0122841 | Ga0208435
• Sample Name: Marine viral communities from Cariaco Basin, Caribbean Sea - 24_WHOI_OMZ (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 59878164
• Sequencing Scaffolds: 2
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Caribbean Sea: Cariaco Basin
• Coordinates
  • Lat. (^o): 10.847
  • Long. (^o): -65.114
  • Alt. (m): N/A
  • Depth (m): 237

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039681	Metagenome	163	Y
F044724	Metagenome	154	N
F052647	Metagenome	142	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0208435_107644	Not Available	1502
Ga0208435_109705	Not Available	1228

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0208435_107644	Ga0208435_1076441	F039681	MSTSTGFEIGDPTKLRIKPTYNVGDYGHDVSFPLLLSQATNLVTLTPSTSSFHQTQHDSANPIDEVLSFISESDKCELLHNGNDTDFDKTWLIQPDMSFFSYKIALSFGIGLKVSAYTSGNITAESIRLTLTELGDGVGDIVIADLTIPTGASALSATGEQIIMFHADIMNKIRFNNNKPIKVRLQTESTKSGTATYQVGILPVYPMIPTAVPKEWLLSQVEIHLHASLDHAFPIWRDSDNDQRLDYSGCSPDGCNSALGEMGT
Ga0208435_107644	Ga0208435_1076442	F044724	PFMASTSSLTAGQSYLTKCIIESNSINLLPKVFQVPPILGGLGVFTNSLTPMLDAVECNTPLQLGATQQFRIYGQNFIANTVANRLGLGLHYSESVTNMKEKFYDMPTNETNTGTAATSVAGENVTINDGVFLEDIMPTVVSGVVTLSESYIGYMSVTSNDFGNSMPLNVPVQPISTALGTTTSVGMAKQPHYTNIHMPMKSSCLISHSYVQDEALTATGNFTITYGYTKS
Ga0208435_109705	Ga0208435_1097052	F052647	MEILDFMPLIYISVGLTATYFIGKLILGHMTQLKKVKRGIEVQKEKKSFENGLEDLIDNSPEMYVKVMQELEHLKTNGADEKQMSSLQRKADLLKMVVENQEIINLAGKPLFRVLGKFVGNIGR