3300025009: Soil microbial communities from Rifle, Colorado, USA - Groundwater F1

Overview

Basic Information

• IMG/M Taxon OID: 3300025009
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053054 | Gp0054403 | Ga0209416
• Sample Name: Soil microbial communities from Rifle, Colorado, USA - Groundwater F1
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 229619307
• Sequencing Scaffolds: 15
• Novel Protein Genes: 15
• Associated Families: 9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2
Not Available	5
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales	3
All Organisms → Viruses → Predicted Viral	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil Microbial Communities From Rifle, Colorado, Usa
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil → Soil Microbial Communities From Rifle, Colorado, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater biome → planetary subsurface zone → groundwater
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Subsurface (non-saline)

Location Information

• Location: Rifle, Colorado, United States
• Coordinates
  • Lat. (^o): 39.53
  • Long. (^o): -107.78
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026738	Metagenome / Metatranscriptome	197	Y
F029285	Metagenome / Metatranscriptome	189	Y
F048726	Metagenome / Metatranscriptome	147	Y
F071374	Metagenome / Metatranscriptome	122	Y
F071896	Metagenome / Metatranscriptome	121	N
F071990	Metagenome / Metatranscriptome	121	Y
F079599	Metagenome / Metatranscriptome	115	Y
F084915	Metagenome	111	Y
F096738	Metagenome / Metatranscriptome	104	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0209416_1000686	All Organisms → cellular organisms → Bacteria	31619
Ga0209416_1000719	All Organisms → cellular organisms → Bacteria	30724
Ga0209416_1001200	All Organisms → cellular organisms → Bacteria	19445
Ga0209416_1001252	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	18759
Ga0209416_1002004	Not Available	12183
Ga0209416_1002655	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	9323
Ga0209416_1004136	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales	6292
Ga0209416_1005558	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales	4875
Ga0209416_1007484	All Organisms → cellular organisms → Bacteria	3827
Ga0209416_1013467	All Organisms → Viruses → Predicted Viral	2400
Ga0209416_1014075	Not Available	2322
Ga0209416_1018682	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales	1855
Ga0209416_1022087	Not Available	1622
Ga0209416_1055692	Not Available	760
Ga0209416_1085431	Not Available	526

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0209416_1000686	Ga0209416_10006865	F071374	MSEQEAIAWLKGERSMTNTVPQHPFETWQSRIAEADAFMTQQAYWIVKAHNELLIR
Ga0209416_1000719	Ga0209416_10007195	F071990	MAEPTTRFRKIPLATATTALDTAAERLAAIASEAIVSTGSGNEADFGTVDISGGAANSGVQTILWDVTADGGNTKVETFKLWLSSNGFDQAGSVIKMQPLSGGDQASPSNTENYVANAVVGSYTWATMPETEPAQNVWPTDEGVDMVLSTTSDDVVMWAMYAAIAASETTGTYKGTDAGYELQFSYKYSYS
Ga0209416_1001200	Ga0209416_10012005	F026738	MADRAVTLSGSFQRVTLGATTKLLGAGRYEISGVTRKTVDASEFGVDIDIYEFGSADGGTITLSDVSYDPTDPMQNYLRSCVQSGIKMDNGATSGIRFWINSTSYLSVGTSGNILFTNAGKVSADRNGMAKTDFSGQVSGAFMYLT
Ga0209416_1001252	Ga0209416_10012521	F048726	MANNFIGRSLVANLAEQNVELNMAFINLIVNDSANTITVTFDEATTSSNVMVFKAGEQRTNIPVPFEKLYYKASADT
Ga0209416_1002004	Ga0209416_10020044	F084915	MKELKEWLINEINSINKDSHNESTYAWAKGYNKACLEILDKIKMIEKDKLNTKK
Ga0209416_1002655	Ga0209416_10026552	F071896	MVTKKIQPLDADTKVRIINNSNSKIHWIQLNGRPITLLKIGTPSTLPFIELENMAYTSDLIQTGDIYVQDKNVFDALGLNVKYEDIKLHTQLKTMLANLNSEELKEEIEKLPNGNKELLAELAVENYNDLKGSVVDAIEDGTKVKVTLIKEDEKANKQNQQKNDK
Ga0209416_1004136	Ga0209416_10041362	F048726	MTTNFIGRSLTANEIEQNVELNMAFINLIVNDSINIVTLSFDIASASAANNLMVLKAGESRTNIAVPFKKLYYKAAADASAMRIEGLAKAEF
Ga0209416_1005558	Ga0209416_10055586	F071896	MAKTTQSKNQSNDFNTIDPDTKVRIINNSNSRIHWIQLNGRPINLMKIAAPASLPYVELENMAYTSDLIQTGDIYVPDKKVFNSLAILNLKHEDIKLHSELKRMLANLEAEELKEEISKLPDGNKELLAELAIDEYSNLKGSVIDTIEDETKVKISLMKEDEKANKENQEKNKTK
Ga0209416_1007484	Ga0209416_10074846	F029285	MKNHADYSLYKCPYSHIEKECGHELNGPEGYERTYGVWCPCGFRGPVFCLDPEELKLELK
Ga0209416_1013467	Ga0209416_10134674	F071896	IQSKNQSNEFNTIDPDRKVRIINNSNSRIYWTQLNGRPINLMKIAAPASLPYVELENMAYTSNLIQIGDIYVPDKNVFDSLGIINLKHEDIKLHSELKSMLANLNAEELKEEIQKLPDGNKELLAELAIDEYSNLRGSVIDTIEDETKVKVTLIKEDERANKENQNKNK
Ga0209416_1014075	Ga0209416_10140753	F071896	MAKTTQSTTKSNEFNTIDPDTKVRIINNSNSRIHWIQLNGRPINLMKIAAPASLPYVELENMAYTSDLIQTGDIYVPDKKVFDALGIINLKHEDIKLHSELKRMLANLDAEELKEEISKLPDGNKELLAELAIDEYSNLKGSVIDTIEDETKVKISLMKEDEKANKENQDKNKK
Ga0209416_1018682	Ga0209416_10186821	F071896	MAKTTQSKNQSNEFNTIDPDRKVRIINNSNSKIYWTQLNGRPINLMKIAAPASLPYVELENMAYTSDLIQTGDIYVPDKDVFDALGIISLKHEDIKLHSELKRMLANLEAEELKEEISKLPDGNKELLAELAIVDYDNLRGSVVNTIENET
Ga0209416_1022087	Ga0209416_10220872	F048726	MTNFIGRSLVANEIEQNVELNIEFINLIVNDSANIVTLSFDIASASAANNLMVLKAGESRTNIAVPFKKLYYKANVDASAMRIEGLAKAPF
Ga0209416_1055692	Ga0209416_10556923	F079599	MGYETLKNIIDFNKEQANLHQADEELENDMCPYDAWPLKENEWGYRACAICGRLWLGNREVL
Ga0209416_1085431	Ga0209416_10854311	F096738	MSIKRVSIYDMDGTIVCSLHRYRTIGDKIDLAYWRENEFRAMEDSLLPMADQYKADLLDPECYTIIATARV