3300024987: Wastewater bioreactor microbial communities from Cape Town, South Afric - Thiocy_cont_300_biof (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300024987
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118793 | Gp0095079 | Ga0209933
• Sample Name: Wastewater bioreactor microbial communities from Cape Town, South Afric - Thiocy_cont_300_biof (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 280019008
• Sequencing Scaffolds: 4
• Novel Protein Genes: 7
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Adinetida → Adinetidae → Adineta → Adineta ricciae	2
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Adinetida → Adinetidae → Adineta → Adineta steineri	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Wastewater Bioreactor Microbial Communities From Cape Town, South Africa
• Type: Engineered
• Taxonomy: Engineered → Bioremediation → Hydrocarbon → Unclassified → Unclassified → Wastewater Bioreactor → Wastewater Bioreactor Microbial Communities From Cape Town, South Africa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: South Africa: Cape Town
• Coordinates
  • Lat. (^o): -33.936637
  • Long. (^o): 18.478905
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025660	Metagenome / Metatranscriptome	200	Y
F042976	Metagenome / Metatranscriptome	157	Y
F092364	Metagenome	107	Y
F094111	Metagenome	106	Y
F095751	Metagenome	105	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0209933_1026843	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Adinetida → Adinetidae → Adineta → Adineta ricciae	1241
Ga0209933_1031000	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	1118
Ga0209933_1036525	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Adinetida → Adinetidae → Adineta → Adineta ricciae	979
Ga0209933_1052300	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Adinetida → Adinetidae → Adineta → Adineta steineri	649

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0209933_1008187	Ga0209933_10081871	F092364	LTINDILRGQIQPNKSFRRQSVLVQSAAGITMVMFVIGFINGICSFITFRNKELRKVGCVLYLLASSITSLLTITMFTVKFWFVVFIQLHSIISSSILQTDCAFIGPVLKLCLYLDGWLNACVAIERTVNVSKGITFDKKMSKRAARWIIPILFLIIMGTIIHEPISHELFEYPTQKYKPINNNLAMNKSMRNEIYSEYEIEHNVLCVIRYSRSVQTYNTITLFVHLVVPFLLNLCSALFIIFGTARQRSTTHNNQTLREHILKQINEHKQLLISPIILLIMALPRLIISLVSGCVDPSNNPWLYLCGYFTSFIPPMLIFAVFVLPSELYWKTFKNSITKWRRHGCW
Ga0209933_1015327	Ga0209933_10153271	F092364	VSLFIITIKTNLFLDKKHGNCIIGDQCNLYAKGIGLTINDILRNQIQPNTSFGNQSTLIQSAVGITMIMFLIGFINGIFSFITFRNKELRRVGCVLYLLASSVTSLLTITMFTIKFWFVILIQLYSTVNTSILRTDCVFIGPILKVCLHLDGWLNACVAIERAVNVAKGVKFNKTKSKYVAKWIIFIIPILIIITIIHEPAHHELFEHTTQKYKFANNNLTVNMSIETEHNLLCVIRYSRSVQTYNTFTLFFHLLLPFVANLCSALFIIFGTARLRSGAKKNQTFKAHIIKQMKEHKQLLISPVILLILTMPRLILSLVSGCVDPSSNPWLYLCGYFISYIPPMLIFVVFILPSELYTKTFKEEITKWLQRIRRRPA
Ga0209933_1019066	Ga0209933_10190662	F095751	MRFSPNTLAQVQNIIAQNFNPPSVEQHRPYVAVYVRRSDKVKSKEMSQAYTLKQYFDLFENDTRRTNISTIYLNSEEEGVFDEFNDFNKEKQGYYKLIRINVTKDVVWGKITGMSREQREKITIEFLTDLYIEANADLHSGTLT
Ga0209933_1026843	Ga0209933_10268431	F094111	MFLRICIGLFIYQQQYLTSTTFSFNQPRFRINATWNSSATTFAKQRFVGTNPYGIFVNSNNSIYILNRNTGQIHIWLNENHLSPTKTISGSLSDPLSLFVTTNGDIYVDNGNNRRVNKWIRENETWISVMNVSSYCYGLFVDIYESLYCSLHDNHRV
Ga0209933_1031000	Ga0209933_10310001	F025660	EREREKEKERNSIIYKSSAFSETRRSKMKFAVLLIVFVAILFVSTANGFLFSKGPKCAVAVFKGGKEFSGEKIMANKSFVPYLKTIGAVAKGCKVKVHVVDSYKQLKSPTEFVLSTQLPLALGRGIQFDLQDSTGGTLCNKLCMLSHSHKTLPAAKCFLDGVQNKGIKFTAPNTLDDGSVAKLSVTEANKLKVDVQTLCAPKQKAVKAPKVKTI
Ga0209933_1036525	Ga0209933_10365251	F094111	LTLSYNQPRFCLNTIWNSIATSFADQSFLGTDPHGIFVNSNSSIYIPNRQTGQIYIWLNENHLNPTKTIEGNLSDPFSLFVTTNGDIYVDNGQYNGRVDKWIVENETWISVMNATSPCFGLFIDIYENLYCSMFYNHRVDKKWSNSIISIESTKWNNCCRIWISKCNNQT
Ga0209933_1052300	Ga0209933_10523001	F042976	VFSVFDFPRPSNCRFITPLLIFVACVLLTAGLFDYAASALLNYHSSRAFIAALVFAYSALPIAAFVAGRFSALERSVLINNEVHTAQKYSATNGNGL