3300024972: Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 10_HOW4 (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300024972
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0114290 | Gp0111072 | Ga0208626
• Sample Name: Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 10_HOW4 (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 136652456
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 2

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
Not Available	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Freshwater Sediment Methanotrophic Microbial Communities From Lake Washington Under Simulated Oxygen Tension
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Methanotrophic Microbial Communities From Lake Washington Under Simulated Oxygen Tension

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater lake biome → freshwater lake → lake sediment
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Sediment (non-saline)

Location Information

• Location: USA: Lake Washington, Seattle, Washington
• Coordinates
  • Lat. (^o): 48.3807
  • Long. (^o): -122.1599
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034190	Metagenome / Metatranscriptome	175	Y
F093898	Metagenome / Metatranscriptome	106	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0208626_1015258	All Organisms → cellular organisms → Bacteria → Proteobacteria	1444
Ga0208626_1032165	Not Available	858
Ga0208626_1032372	Not Available	854

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0208626_1015258	Ga0208626_10152582	F093898	MMRFLLARAVNPQLSLLDGLRDWNAIAAGLREPPRRRRRYQGDNLERFLS
Ga0208626_1032165	Ga0208626_10321651	F034190	FTGDSAAFPHIWAVLQHLIDTRGAFLNGDWPFINAVLGLMSPSATHPCPICIVSHNNYLHFSRHRTPADRHSLHPDQCPLLTIPPERIVPTPLHLFLGISNRIILDAYKELFGEAVVATSVAAVKTVHSAGCGGLSDLYDLNGPEISKFIKQIDPEKGGSPLKAAAAAPTASAEQKASHSILSRWLQQLHHCLLRSDDWTAVDIDGWRSVVDDIWQHWCAEAHSEPFPKLHMLRHSLEFAERHRFLGRASEAQIESFHASFNTLFHKHHLNQGGNTDERLRRSLAD
Ga0208626_1032372	Ga0208626_10323721	F034190	RHSLHPDQCPLLTIPPERIVPTPLHLFLGISNRIILDAFSELLGRERVEAALKAVTTVHSAGCGGKSDLYDLNGPEIRKFIKRKCSVSILAAAAASSSLPPSTTASHSILSRWLQQLHTHLLHKDDWESEEIEEWRAAVDDIWQNWRAETKQAAFPKLHMLKHSLEFAERHRFLGRASEAQIESFHASFNTLFHKQHLNQGGNTDERMRRCLADAALRAVQPFLSVSPSTPSTSF