3300024944: Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 127_HOW14 (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300024944
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0114290 | Gp0111149 | Ga0208518
• Sample Name: Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 127_HOW14 (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 65698508
• Sequencing Scaffolds: 2
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Freshwater Sediment Methanotrophic Microbial Communities From Lake Washington Under Simulated Oxygen Tension
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Methanotrophic Microbial Communities From Lake Washington Under Simulated Oxygen Tension

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater lake biome → freshwater lake → lake sediment
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Sediment (non-saline)

Location Information

• Location: USA: Lake Washington, Seattle, Washington
• Coordinates
  • Lat. (^o): 48.3807
  • Long. (^o): -122.1599
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026412	Metagenome	198	Y
F093312	Metagenome	106	Y
F105273	Metagenome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0208518_104202	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1856
Ga0208518_114607	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	749

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0208518_104202	Ga0208518_1042022	F093312	MTLKQSSVVHIQALVSADVVLPGSSSKLRLLVINLASVPGGQLVNSPTAQSLERYLQL
Ga0208518_112912	Ga0208518_1129121	F105273	MLVTAGFFSSGQSSTDSVYTGTLDSGKAKVVIDRETKGLNKAGLAKAIRTGTIYNSTSPYHNDLHEFTYWVAMRDFCNKALLKMRANGEVNKKRFKELKRKLSNA
Ga0208518_114607	Ga0208518_1146071	F026412	VPTLLNLLHIPDTVTWALSSAATALIFSFVLLIQFRRRRTVEAGRFPPWTIIVYAVSIVVIVGLWLNVAGIPFPPSVGPYAVALTWAICVFGFIFVRTIELFLHREV