 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300024511 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0133460 | Gp0293389 | Ga0255196 |
| Sample Name | Freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Law_RepA_8h |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 111446142 |
| Sequencing Scaffolds | 38 |
| Novel Protein Genes | 42 |
| Associated Families | 41 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 21 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria | 1 |
| All Organisms → Viruses → Predicted Viral | 2 |
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 7 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae → unclassified Alcaligenaceae → Alcaligenaceae bacterium | 1 |
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 2 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → Acidimicrobium → unclassified Acidimicrobium → Acidimicrobium sp. | 1 |
| All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → unclassified Parcubacteria group → Parcubacteria group bacterium 20-58-5 | 1 |
| All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | freshwater river biome → river → river water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: Louisiana | |||||||
| Coordinates | Lat. (o) | 29.8571 | Long. (o) | -89.9778 | Alt. (m) | N/A | Depth (m) | 5 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001129 | Metagenome / Metatranscriptome | 768 | Y |
| F001150 | Metagenome | 764 | N |
| F003540 | Metagenome | 480 | Y |
| F004836 | Metagenome / Metatranscriptome | 421 | Y |
| F009952 | Metagenome / Metatranscriptome | 310 | Y |
| F010028 | Metagenome / Metatranscriptome | 309 | Y |
| F010029 | Metagenome / Metatranscriptome | 309 | Y |
| F011664 | Metagenome | 288 | N |
| F013516 | Metagenome / Metatranscriptome | 270 | N |
| F013892 | Metagenome / Metatranscriptome | 267 | Y |
| F014844 | Metagenome / Metatranscriptome | 259 | Y |
| F015188 | Metagenome | 256 | Y |
| F016270 | Metagenome / Metatranscriptome | 248 | N |
| F020666 | Metagenome / Metatranscriptome | 222 | N |
| F020891 | Metagenome | 221 | N |
| F022193 | Metagenome | 215 | N |
| F023334 | Metagenome / Metatranscriptome | 210 | Y |
| F023494 | Metagenome / Metatranscriptome | 210 | Y |
| F023835 | Metagenome / Metatranscriptome | 208 | N |
| F028782 | Metagenome / Metatranscriptome | 190 | Y |
| F032275 | Metagenome | 180 | N |
| F032278 | Metagenome | 180 | Y |
| F034091 | Metagenome / Metatranscriptome | 175 | Y |
| F042299 | Metagenome / Metatranscriptome | 158 | N |
| F042311 | Metagenome / Metatranscriptome | 158 | Y |
| F044357 | Metagenome | 154 | Y |
| F046842 | Metagenome / Metatranscriptome | 150 | N |
| F048844 | Metagenome / Metatranscriptome | 147 | N |
| F050359 | Metagenome / Metatranscriptome | 145 | N |
| F051877 | Metagenome / Metatranscriptome | 143 | Y |
| F058103 | Metagenome / Metatranscriptome | 135 | N |
| F059903 | Metagenome | 133 | Y |
| F062686 | Metagenome / Metatranscriptome | 130 | Y |
| F073182 | Metagenome / Metatranscriptome | 120 | N |
| F077210 | Metagenome / Metatranscriptome | 117 | Y |
| F081256 | Metagenome / Metatranscriptome | 114 | N |
| F082574 | Metagenome / Metatranscriptome | 113 | N |
| F087096 | Metagenome / Metatranscriptome | 110 | Y |
| F094942 | Metagenome / Metatranscriptome | 105 | N |
| F095377 | Metagenome / Metatranscriptome | 105 | Y |
| F097190 | Metagenome / Metatranscriptome | 104 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0255196_1000380 | Not Available | 6857 | Open in IMG/M |
| Ga0255196_1000470 | Not Available | 6220 | Open in IMG/M |
| Ga0255196_1007832 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria | 1789 | Open in IMG/M |
| Ga0255196_1008251 | All Organisms → Viruses → Predicted Viral | 1745 | Open in IMG/M |
| Ga0255196_1010304 | All Organisms → Viruses → Predicted Viral | 1550 | Open in IMG/M |
| Ga0255196_1010964 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 1502 | Open in IMG/M |
| Ga0255196_1012674 | Not Available | 1387 | Open in IMG/M |
| Ga0255196_1012827 | Not Available | 1378 | Open in IMG/M |
| Ga0255196_1014029 | Not Available | 1309 | Open in IMG/M |
| Ga0255196_1015581 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 1231 | Open in IMG/M |
| Ga0255196_1016829 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 1176 | Open in IMG/M |
| Ga0255196_1019549 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 1074 | Open in IMG/M |
| Ga0255196_1021619 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 1008 | Open in IMG/M |
| Ga0255196_1027076 | Not Available | 870 | Open in IMG/M |
| Ga0255196_1031482 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae → unclassified Alcaligenaceae → Alcaligenaceae bacterium | 787 | Open in IMG/M |
| Ga0255196_1032690 | Not Available | 768 | Open in IMG/M |
| Ga0255196_1034086 | Not Available | 747 | Open in IMG/M |
| Ga0255196_1036345 | Not Available | 714 | Open in IMG/M |
| Ga0255196_1039567 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 675 | Open in IMG/M |
| Ga0255196_1040062 | Not Available | 669 | Open in IMG/M |
| Ga0255196_1040139 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 668 | Open in IMG/M |
| Ga0255196_1042312 | Not Available | 644 | Open in IMG/M |
| Ga0255196_1044595 | Not Available | 621 | Open in IMG/M |
| Ga0255196_1045659 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 611 | Open in IMG/M |
| Ga0255196_1046473 | Not Available | 604 | Open in IMG/M |
| Ga0255196_1051571 | Not Available | 563 | Open in IMG/M |
| Ga0255196_1051688 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 563 | Open in IMG/M |
| Ga0255196_1052979 | Not Available | 553 | Open in IMG/M |
| Ga0255196_1053416 | Not Available | 550 | Open in IMG/M |
| Ga0255196_1055194 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 538 | Open in IMG/M |
| Ga0255196_1057875 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → Acidimicrobium → unclassified Acidimicrobium → Acidimicrobium sp. | 520 | Open in IMG/M |
| Ga0255196_1058178 | Not Available | 519 | Open in IMG/M |
| Ga0255196_1058259 | Not Available | 518 | Open in IMG/M |
| Ga0255196_1059860 | All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → unclassified Parcubacteria group → Parcubacteria group bacterium 20-58-5 | 509 | Open in IMG/M |
| Ga0255196_1059982 | All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon | 508 | Open in IMG/M |
| Ga0255196_1060263 | Not Available | 507 | Open in IMG/M |
| Ga0255196_1061530 | Not Available | 500 | Open in IMG/M |
| Ga0255196_1061574 | Not Available | 500 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0255196_1000380 | Ga0255196_100038016 | F020891 | MTFSEHAFAACCHKAKQVGRRLNKDEWLATMQAAYDSYPHSGLLVSDSPKPKKAAPKVVEEGWLEELEANPAYAGIDIRRELGKAQAWASVRGVGVSQRRFINWLNKAMADRPIQYSGAGKTSFAPVQPQGPAEPAGWRDWVRENAQNPDNANKPWSSLDPAAQKYIISQLNA |
| Ga0255196_1000470 | Ga0255196_10004701 | F023334 | MPNPTVITDAELTGLLKNVYSQFREKVQNLVTPLLAQLEKGRAGGPRNMRWGGNNVFFDVVTGRPAGATFSSAGYFPPDTTATEVQANVGVVRAYTTRQIDGLAFVGTQSKDAAFTTIAKKTMEEIKEASTLLMQQALHNKADGVVALIGTVSSTTSIIVSSPYGVSGAGQGSLLLSVGDYIAVLDTSASDAVLGRAAITAISNSGDNATLTLGTAIAGMAATDKIVKATA |
| Ga0255196_1007832 | Ga0255196_10078323 | F023835 | MAFNKPRTLQGEIAALEREVDQHRRDMAEIEGNDGVAHGNVSDWLITSGRTLIDKGDELLSLLTLDPDFGKHRDAFMRELKTFRKFYKKWSDKNAD |
| Ga0255196_1008251 | Ga0255196_10082514 | F001150 | IWCIVLTKHDKNRMRIAMAESQASANAKWTPEQQDRVDAAIRKMARMLPRFTADQVWYELGASFPVTKGMTARLLVAQRQGVIKNTGEIAYAERGGEHDHAQRLTIWQSL |
| Ga0255196_1010304 | Ga0255196_10103042 | F015188 | IAQPAIQAGKAVYKELPLSGMKYGWTQRDRKLFPFTVTKAINGVRMRFDTRRNAVGVILIEQKDPAAAIFETAGRANANKLGNALGFVGAGRTRLIGPAVYKARRGIEAEMTKMIAKTMRDVQRDI |
| Ga0255196_1010964 | Ga0255196_10109641 | F044357 | MAGVAVVASGNYDLEIDTGFVQDAFLLDDATAGLLNNTQYVLDGTTQFASVLDGVNQVNVRRGRRDQGDQFSAGTMTFTMLDTDGIFMPFDEDSPYYD |
| Ga0255196_1012674 | Ga0255196_10126743 | F023494 | TALNRAFLSFPQLNCLVTTTNFIDKKSHLREQILISQFKPNQLSKVNTKELG |
| Ga0255196_1012827 | Ga0255196_10128273 | F023494 | FVSFPQLNRLVTTTNFIDKKTHMGELLFATSFQLNQLSKLKTKELG |
| Ga0255196_1014029 | Ga0255196_10140293 | F097190 | PADLKSVRLQTKIDKQTTVNCLNALLKKGCIKTSFRIDPFTKERVWEWVKDEYEVKKVSRPKKKFKPVLAKQEEGISFFNNPFNLRVA |
| Ga0255196_1015581 | Ga0255196_10155812 | F032278 | MIRLTPSQITVDAAAAEGLPSRSISGVAVTYDETAVVNDGTKVRFLQGSLPVTGRDPKLFGQHDSNQIIGKVVERLDTPQGMMFTAK |
| Ga0255196_1016829 | Ga0255196_10168291 | F048844 | MRLKLKVDLNDGTQPVELTTNMFVICEWEKTEGRKISDGKGIGYSDLVCWAYHLLKLSG |
| Ga0255196_1019549 | Ga0255196_10195491 | F094942 | MIKVGEVSKHELELVNRLVHHCEPPEQLAKGVLLTTQNGKRVWQVGARTANMTVTGSNADFEGSYIVFGRFIQAAYAQCGFNSSCDLKIDNNEITATVDGGTTTMIIGTKTYPLRTFDEPSDVTALIPLGEYNRIFGSVTTIPTGCTDWESLFEYPFSAIIKVTDGKVSVQSRWPKLKTPEIVM |
| Ga0255196_1021619 | Ga0255196_10216194 | F011664 | LTKPYVVTQQPVVKSALAGTQKWAQLACKNSNGSLWINGIYVNRDMRTRPGILSNHARGLAMDLSYRWLSQKTLGRQDGRKTSLAFIVKCLQNAEHLGIQLVIDYQLQRSWRCDRGTWKPLPSVEQ |
| Ga0255196_1025342 | Ga0255196_10253422 | F046842 | MITLKQKIQKQRNLFSYVLICLALMLLASSFLDLPPLIGNWENKAWSIINLELSDNYYPPGAAIALIPFLWAGPEFWPAIYFYYSLSAGVYFKLCQFVTSNKLRLIALIALPANSYLTWLCLTSADQVIELLTLLLFGYSAAKSRFKSALFFGFLLCFTRPAYW |
| Ga0255196_1027076 | Ga0255196_10270761 | F081256 | RSKPHRRPHITTRRLSRKSANPMRRGIGLSLWVGIGSFPVRHHPMKNKSPFLVLFFVLFSAGLRGELEFSAFLVLPKSELFVLRDKEQDQGSGFLHLGQSFRGYTLKSFDKNREVITVQKNGQDLEIRLKESKIQDGKLTVEGAISFLNGQELEGVRVSLFIGEESVIPISETVRLAITPTRMADGNMKYAVRFITMTEGKEEVVSCPTVVALPGSPFAVKVGEYGYRFAPQP |
| Ga0255196_1031482 | Ga0255196_10314824 | F042311 | MSTIAVNTITDASGGTTATINGYTPTVSNMAGRNRIINGAMVIDQRNAGAS |
| Ga0255196_1032690 | Ga0255196_10326902 | F042299 | ITLVAGVLQYVFWFVAWADWLGVIGVILGFILTPGVVIFPIIYWIVEGEFPTLYFALMFAGWFGLRLKRG |
| Ga0255196_1034086 | Ga0255196_10340861 | F059903 | KAIRQPSEELMKQHFIDIVKLMESPSARSPWYVVEGSKGKHYVSALGGRAAKGLREGTELKLYRNEGKQMSAYILSR |
| Ga0255196_1036345 | Ga0255196_10363451 | F095377 | NAPGGAFHGIPWPTKADADEILRAVLAQHERTAPCEC |
| Ga0255196_1039567 | Ga0255196_10395672 | F010028 | YHELCDVWGQAPELVVVDYLDLVEAGETVPDKATFLKSFGRRHDVPLLVLHQTSRTAGADGAKLTMSSGSYGGEQQATSIIGVRRKKFQIMSEMNEIVEKLDRSHSERAQERLEELRYLLTIHEFTVTLSLLKNKRPGGSLVDDVDYELDLHTGRLRALRNAELPAQHLERVNHAPF |
| Ga0255196_1040062 | Ga0255196_10400621 | F087096 | MTQQIHRRRVGDTRTVLPVTLQQPDSAGVLQPVNLTGLSVQFKMLNAATGAAEVALTSTGVTVTTAATGQVQYDFSAAGVDTAGIYWGTFVVTQSSETDSFPVRTQDLKICIDSDTQTAEEAYQEALG |
| Ga0255196_1040139 | Ga0255196_10401391 | F034091 | EDLLGYNTQTREFGGIMEEWQNRSMAYGYPISHWIVEINAAQRFLLAHDFVRRWQALHGINVVPHTTARNKFDENLGVEALLPPLWRSGQVRVPTMRGNWKTMAFIDEMCSWTRDKKNGTDLVMAHWFAELHMPQLRPLHAPPRMWRPSWI |
| Ga0255196_1042312 | Ga0255196_10423121 | F003540 | VGWLLTEIASFNNRLMSVESKMPALITPEGVPTDSPLSAARRQELKDDIMEDIHDLQVRVKLMEERQK |
| Ga0255196_1044595 | Ga0255196_10445953 | F082574 | MTDKEKAYALLRKLADETTYVMVHPNELRILLDDLDHMRLRVRIAREELSDAWQLYREDM |
| Ga0255196_1045659 | Ga0255196_10456592 | F016270 | MDLSYRWLNQKKLGKQDGRKASLAFIVKCLENADHLGIQLVIDYQLQRSWKCDRGTWQPLPSVEQGDWYHIEIDPHVANDAMIAKQRWI |
| Ga0255196_1046473 | Ga0255196_10464731 | F062686 | MLMHLLWAAVVVYAVYTVADVARQFAPMPPSLPSPMAPVDVPEDLIAVANQEQVGWAQEEVLRAIRERYDELKDWNKVRSAFG |
| Ga0255196_1051571 | Ga0255196_10515711 | F013516 | IDNPAMVTYPRPQGFVVTTEGFQMISTAGGFMGTNGYVSYNTNPANPVYLFYRRAPYTYAGDTFSATATYVAGQYVYYTRTTGAQVGTSDYWKCLSATTAGQDPEDTPSKWELQELPEALSGILVWQTFGDWLTQDGQMEKAASAYQTAELKKLNEWDRIERQMPDNFQVNVYTHVTSQNRSW |
| Ga0255196_1051688 | Ga0255196_10516881 | F009952 | QHIRDTQLSLFEARDAVFLARCRAIAADICRQQGSVSINEVRQRVEIPAGMHPSVLGAVFKSKKFKAIGFTEATHPQAHARVVRVYQLTGEGETNGQ |
| Ga0255196_1052979 | Ga0255196_10529791 | F077210 | ARGSACEFYEQVRGIMSVEVPGTLGRTFSYYGYVATFIADADMVKYIVVS |
| Ga0255196_1052979 | Ga0255196_10529792 | F010029 | MATYLTASKQLLDNYACISTLEPTDIQVGDSVVVGSLGAPFNGTFTVLACPQYKYTGTDSTTGEWFFDETIAIPNQILFACTGADVDFVAIYTGTVAFTPICTWITATDIEDWIGIGTATAGDTTF |
| Ga0255196_1053416 | Ga0255196_10534161 | F014844 | MLIGYGYGYPLSTLQGGGLSAAAWAAFNTRADADGATTAEAAVSGCLFGRFATIYNF |
| Ga0255196_1053416 | Ga0255196_10534162 | F001129 | MQFIDAAVSGANFDFIVVNTAATFTTLTGSGGEDLLTAYSMSGKSVSAGIVISGRNGGKITAVTPSVGSVIGYTFL |
| Ga0255196_1055073 | Ga0255196_10550731 | F058103 | VTTIPTGCTDWESLFEYPFSAIIKVTDGKVSVQSRWPKLKTPEIVMSCEAVTSGEGKIVLPDQAIGYMSLCIHPEEAEFIKISFAAKDPSYARFESGPVTLVVEKSDTLSAQPIEKFIKHLEANHFEFQVGPDGILAVNYENVSIRVQLFDGFPTIARCTKTILVDVKCTTELLAEINA |
| Ga0255196_1055194 | Ga0255196_10551941 | F032275 | TADEVWYELGASFPVTKGMTARLMVAERRGVIKNTGEITYAKRGGQHDHAQRLTIWQSL |
| Ga0255196_1057875 | Ga0255196_10578752 | F073182 | KRSFVFLVWCGIVVAGVVRRAFGFGRLTGKGSAKSYWVDKSPLAKDHFERQR |
| Ga0255196_1058178 | Ga0255196_10581782 | F020666 | MPAPVVIGDSELTGLLKQVYSQYRMKVQNLVTPLLAQLQTAKAGGPRNMRWGGQGVYFDVVVGRPAGAVFSSG |
| Ga0255196_1058259 | Ga0255196_10582591 | F004836 | MATYATASKQLLDNYACISTLEPTDIQVGDSVVVGSLGAPFNGTFTVLSCPQYRYTGVDSTTGEWTFDQTQPIPNQVLYA |
| Ga0255196_1059860 | Ga0255196_10598601 | F028782 | MTANVTITQLPAAGAITGSELVPIVQNGVTKQTTTGAIAASPSQTQTFLTVNQELTLPNSRYLSTGTGLGLTDGGATSFYRITLNGASGSLESAGNGLIAKTAINTIA |
| Ga0255196_1059982 | Ga0255196_10599822 | F013892 | MGNRANFVFVDGAGDSIVLYGHWAGHQMLGKLADAVIAARPRWNDESYATRIAISQLIGDQWNMETGWGLQINSISDNEHKIAVINWKERTFSLHAEDDHRN |
| Ga0255196_1060263 | Ga0255196_10602633 | F022193 | DSHVKDYYEYHAEQQRYFDDVATTQQPVDAGLDEAAALNWCEQMHELTGTWNADVWSEKGWW |
| Ga0255196_1061530 | Ga0255196_10615301 | F050359 | VNVPETVVNVNVPEQRTVVRTVERDADGRILHITERPEQ |
| Ga0255196_1061574 | Ga0255196_10615742 | F051877 | MWEMITVDTVKILSDLSKTVLEDPAPDQFLSHITNKTLASLDARGAILGVIEREGFLSLQGAYGYAKNMVDPYMQIPLWTPMPIT |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |