3300024489: Leaf litter microbial communities from Shasta-Trinity National Forest, California, United States - GEON-DECOMP-229

Overview

Basic Information

• IMG/M Taxon OID: 3300024489
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0132900 | Gp0272140 | Ga0233337
• Sample Name: Leaf litter microbial communities from Shasta-Trinity National Forest, California, United States - GEON-DECOMP-229
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 106924056
• Sequencing Scaffolds: 17
• Novel Protein Genes: 19
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	17

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil And Plant Litter Microbial Communities From Temperate Forests In California, United States
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Leaf Litter → Soil And Plant Litter Microbial Communities From Temperate Forests In California, United States

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): forest biome → litter layer → plant litter
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: USA: California
• Coordinates
  • Lat. (^o): 40.2198
  • Long. (^o): -122.9842
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011735	Metagenome / Metatranscriptome	287	Y
F015054	Metagenome	257	Y
F091248	Metagenome	107	N
F106076	Metagenome / Metatranscriptome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0233337_1001599	Not Available	2170
Ga0233337_1002698	Not Available	1715
Ga0233337_1011409	Not Available	815
Ga0233337_1013996	Not Available	736
Ga0233337_1014929	Not Available	714
Ga0233337_1018718	Not Available	640
Ga0233337_1018745	Not Available	639
Ga0233337_1020264	Not Available	615
Ga0233337_1020805	Not Available	608
Ga0233337_1020890	Not Available	606
Ga0233337_1020978	Not Available	605
Ga0233337_1022095	Not Available	589
Ga0233337_1022276	Not Available	587
Ga0233337_1022359	Not Available	586
Ga0233337_1022599	Not Available	583
Ga0233337_1023247	Not Available	576
Ga0233337_1029305	Not Available	517

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0233337_1001599	Ga0233337_10015991	F015054	MIGMKVEDHLDEATNFISXKSRVVIFEENDLLKLVNEKVPKPDAEEDKSHWKKSDCRARRILVDSVSDHMVPQISQ
Ga0233337_1002698	Ga0233337_10026982	F015054	MIGMKVEDNLGGATNFIFWKSIVLILEENDLIKLVNEKVPEPNVEEDKFHWRKSDATARRILVDSIRDHLVPQISQKKTTRNMFKTLKE
Ga0233337_1011409	Ga0233337_10114091	F015054	TDFIFWKSIVLILEENDLIKLVNEKVPEPNVEEDKSHWRKSDARARRILVDSVKDHLVSQMSQKKTTRKMFKTIKE
Ga0233337_1013581	Ga0233337_10135811	F091248	PDMGLEEEPIYANIEKSAIMKVSTRPELFPCSEVIGWILPHANTSSMIIGNVEGQGYAAFSPGYVALAYHLPEPQIFLSDAWLDNIRMDLIETLKRMLLPGKLYRHREIGEYDTASLRAPYRFIALMLNRIFGRAHGRLFKFEWIPIMFHVATQGTVFNWASLVSSSLSSCVAAALGGESKKKSEFYMSSILVDCILCNQPFPGLKCVWDRERMPVYAAYRPLWAQQYHSHYREVCEQFIMPLYTLIFR
Ga0233337_1013996	Ga0233337_10139961	F015054	MIGMKVEDNLDGATNFIFWNSIVLILEENDPLNLVNEKVPEPNVEEDKSHWRKSDARARRILVDSVRDHLVPQISQKKTTRKMFK
Ga0233337_1014929	Ga0233337_10149291	F091248	SATEGETRIEYIYEDTQCVTGVEPEYKWGDVYRMISRREVPDMGLEEAPIYANIERSAIMKVATRPELFPCSELMRWVLPHTNHNSMLTCNTEGQGYAAFSPGYVALAYHLPEPQLFLTNEWLDDLRMDLVETLKRMLLPGKIFRHRATEEYDTASLRPTYRFIALMLNRIFGRENGRLFKFEWVPLMFFVATEGTIFNWASIVSSSLSSCVAAALEGKERRRSEFYMSSILIDCILC
Ga0233337_1015340	Ga0233337_10153401	F091248	VSDMGLEEEPIYANIEKSAIMKVATRPELFPCSDVMRWILPHTNNNTMLIGNVEGQGYAAFSPGYVALAYHLPEPQIFLSNDWLDNLRMDLVETLKRMLLPGKLYRHRATEDYDTASLRAPYRFVALMLNRIFGRASGRLFKFEWVPIMFHVATQGTIFNWASLVSSSLSSCVAAALGGGEARKKSEFYMSSILIDYILCNQPFPGLKCAWDRERMPVYAAYKPLWAHQYHSYY
Ga0233337_1018718	Ga0233337_10187181	F091248	DKRKRPVVEEVPQAEAETKTEYIYGDTQCVSGVEPEYQWGDVYRLITRREVPDMGLEEEPIYANIERSALMKVTTRPELFPCPEVIGWILPRVDVSTMILKDVNDQGYAAYNPGYVALAYHLPEPEVFVSDDWLSNIKMDLIETMKRMMLTGKHFRPRATNEYDTASLRAPYRFIALMLNRIFGRAHGRLFKLEWIPLIFHVATDGTIFNWPS
Ga0233337_1018745	Ga0233337_10187451	F091248	SRRQKKKAPMVEEQTAIEAVLPTEYIYEDTQCVTGVEPEYKWGDIYRLISHREVPDMGLEEEPIYANIERSAIMKVATRPEMFPCSEVMKWILPHTNHGSMLICNVEGQGYAAFSPGYVALAYHLPEPQVFLSNEWLDNLRMDLIETMRRMLLPGKLYRHRATEDYDTASLRAPYRFIALMLNRIFGRANGRLFKFEWVPLIFYVATEGTIFN
Ga0233337_1020264	Ga0233337_10202641	F015054	MIGMKVEDHLDAATNFISWKSKVLILGENDLLKLVNEKVPDQDVEEDKSHWRKSDVRARRILVNSVRDHLVPQILQTKTTMKMF
Ga0233337_1020805	Ga0233337_10208051	F011735	PYVVSKVLKKGAYELIDFEGNKLSEPRNGLYLKKYYA
Ga0233337_1020890	Ga0233337_10208901	F091248	AAEVETRIEYIYEDTQCVTGVEPEYKWGDVYRMISRREVPDMGLEEAPIYANIEKSAIMKVATRPELFPCSELMRWVLPHTNHNSMLICNVDGQGYAAFSPGYVALAYHLPEPQLFLTDRWLDDLRMDLVETLKRMLLPGKIFRHRVTEDYDTATLRPTYRFIALMLNRIFGRANGRLFKLEWVPLMFFIATEGTIFNWAS
Ga0233337_1020978	Ga0233337_10209781	F015054	MCSVILLGIMVLELPISNMVGMKVEDHLDAATNFISWKSRVLILEENDLLKLVNEKVPEQDVEEDMSHWRKSDARARRILVNSVRDHLVPQILQTKTTMKMFKTLKE
Ga0233337_1022095	Ga0233337_10220951	F015054	TNFIFWKSIVLILEENDLLNLVSDKVPEPNVEEDKSHWRKSDARARRILVDSVRDHLVSQISQKKTTRKMFKTLKE
Ga0233337_1022276	Ga0233337_10222761	F015054	LDENDFLKLVNEKVPEAGAEEDKSYWKRSYARARRILVDSVRDHLVPQISQKKRTRKMFKTLK
Ga0233337_1022359	Ga0233337_10223591	F091248	MSRRQKKKAPVVEERTAIEAVLPTEYIYEDTQCVTGVDPEYKWGDIHRLISHREVPDMGLEEEPIYANIEKSAIMKVATRPEMFPCSEVMRWILPHTNHGSMLICNVEGQGYASFSPGYVALAYHLPEPQVFLSNEWLDNLRMDLIETMRKMLLPGKLYRHRATEDYDTAILRAPYIFIA
Ga0233337_1022599	Ga0233337_10225991	F106076	NAPSLIVKEETVYSTPXRAVNIIAKKTVATKPYKAPLLFPCIIEWXAYVTVTPDDNNITVFNKGSSKGLTASIPIGGHXAPNSTVGDNALXKNAQNIPKKNKASDIINKATPMFNPLXTANVXLPKYVPSLITSRHQNDIDKIRDIRDNVNIVPAPEKLXNVDTALVVSDNSERQVNKGQTEGETRXKGXAX
Ga0233337_1023247	Ga0233337_10232472	F011735	CDPFVISKVLEKGAYEIIDYDGIPFRKPHNGLYLKRYYA
Ga0233337_1029305	Ga0233337_10293051	F015054	MIGMKVEDHLDAATNFISWKSRVLILGENDLLKLVNEKVPEQDVEEDKSHWRKSDARATRILVNSVRDHLVPQILQTKTTMKMFKILKEW