Sample 3300024285

Basic Information
IMG/M Taxon OID	3300024285 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0133460 \| Gp0293406 \| Ga0255213
Sample Name	Freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Law_RepA_8d
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

3300024285 Open in IMG/M

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0133460 | Gp0293406 | Ga0255213

Sample Name

Freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Law_RepA_8d

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	122108281
Sequencing Scaffolds	27
Novel Protein Genes	29
Associated Families	27

Dataset Contents

Total Genome Size

122108281

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	14
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	9
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2
All Organisms → cellular organisms → Bacteria	2

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

Not Available

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria

All Organisms → cellular organisms → Bacteria

Ecosystem Assignment (GOLD)
Name	Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States
Type	Environmental
Taxonomy	Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Ecosystem Assignment (GOLD)

Name

Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Type

Environmental

Taxonomy

Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	freshwater river biome → river → river water
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

freshwater river biome → river → river water

Earth Microbiome Project Ontology (EMPO)

Free-living → Non-saline → Water (non-saline)

Location Information
Location	USA: Louisiana
Coordinates	Lat. (^o)	29.8571	Long. (^o)	-89.9778	Alt. (m)	N/A	Depth (m)	5
Location on Map

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Location Information

Location

USA: Louisiana

Coordinates

Lat. (^o)

29.8571

Long. (^o)

-89.9778

Alt. (m)

N/A

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F009952	Metagenome / Metatranscriptome	310	Y
F010029	Metagenome / Metatranscriptome	309	Y
F013615	Metagenome	269	Y
F020891	Metagenome	221	N
F022657	Metagenome / Metatranscriptome	213	Y
F023835	Metagenome / Metatranscriptome	208	N
F023838	Metagenome	208	N
F024307	Metagenome	206	Y
F030410	Metagenome / Metatranscriptome	185	Y
F031100	Metagenome / Metatranscriptome	183	Y
F031849	Metagenome	181	Y
F033790	Metagenome / Metatranscriptome	176	Y
F034162	Metagenome	175	Y
F036098	Metagenome / Metatranscriptome	170	N
F039097	Metagenome / Metatranscriptome	164	Y
F039171	Metagenome / Metatranscriptome	164	Y
F042299	Metagenome / Metatranscriptome	158	N
F045066	Metagenome	153	N
F048844	Metagenome / Metatranscriptome	147	N
F057897	Metagenome / Metatranscriptome	135	N
F059916	Metagenome / Metatranscriptome	133	N
F061856	Metagenome / Metatranscriptome	131	Y
F063412	Metagenome / Metatranscriptome	129	Y
F075787	Metagenome / Metatranscriptome	118	N
F078620	Metagenome / Metatranscriptome	116	N
F079805	Metagenome / Metatranscriptome	115	Y
F098804	Metagenome / Metatranscriptome	103	N

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0255213_1000012	Not Available	61758	Open in IMG/M
Ga0255213_1004575	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2398	Open in IMG/M
Ga0255213_1005690	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2115	Open in IMG/M
Ga0255213_1011929	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1383	Open in IMG/M
Ga0255213_1011936	Not Available	1383	Open in IMG/M
Ga0255213_1013445	All Organisms → cellular organisms → Bacteria	1290	Open in IMG/M
Ga0255213_1020587	Not Available	998	Open in IMG/M
Ga0255213_1021217	All Organisms → cellular organisms → Bacteria	980	Open in IMG/M
Ga0255213_1021378	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	975	Open in IMG/M
Ga0255213_1024560	Not Available	897	Open in IMG/M
Ga0255213_1024883	Not Available	890	Open in IMG/M
Ga0255213_1028274	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	824	Open in IMG/M
Ga0255213_1030554	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	786	Open in IMG/M
Ga0255213_1034804	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	727	Open in IMG/M
Ga0255213_1035841	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	714	Open in IMG/M
Ga0255213_1037043	Not Available	700	Open in IMG/M
Ga0255213_1037863	Not Available	691	Open in IMG/M
Ga0255213_1038069	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	689	Open in IMG/M
Ga0255213_1038970	Not Available	679	Open in IMG/M
Ga0255213_1039383	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	675	Open in IMG/M
Ga0255213_1041854	Not Available	651	Open in IMG/M
Ga0255213_1042856	Not Available	642	Open in IMG/M
Ga0255213_1044334	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	629	Open in IMG/M
Ga0255213_1051834	Not Available	573	Open in IMG/M
Ga0255213_1052346	Not Available	570	Open in IMG/M
Ga0255213_1060319	Not Available	523	Open in IMG/M
Ga0255213_1061328	Not Available	518	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0255213_1000012	Ga0255213_100001214	F031100	MDVPSILDTAKYRHLVLDGVDSVSTALANLQGFQIPEYDELSLTYYGVTNNIATVVYKKASTPVATLTLTYSVQPPTSNDANLINVSIS
Ga0255213_1000012	Ga0255213_100001225	F031849	MADVLKPLPAIVTDTYANKAPRISDQSKPRKLNLDVVDPSPTSNGDTVDPKTLQVRRTFKDAAQAHSAYRRLKQQNVERNRKNQLIQKKLNNEPPYSAKKLESMGQNWRSNRPTGFLSTMVSRIQPPFKQVIEQAPTLTYTKYPVEGVDSENKTKIFREEITKCIRGWKGHDDIVAQVVHENTTFGFCALCWDDLRDWKPEFLRQDYTFFSIETPQETEATPIWARKRRYQIAELLPVLEDPQMSAMAGWHIKNLVKAINNAIPAGRTLDSDDDARRYEDWIREGSYGASYENDAKYVELGELLVREPNGKISRFLFDDKSGDEICTQIDRYSKMSECLALFSVEIGSGALMSSRGAGRDLYNTHIAVEKARNLVVDNSYLSGMLLLKKGPNAKAGATPLTVHHPVAYIAEGYEVIPQNMPANVQDFLNLDRFISGLAEIQIGTFLPSSALGVRDQKVTASEINRVAAIENQIREGILMRFTKQYSKAVERMQRGICHPEHIKAAAELKTKLDIARQMVPNAVWARADVVDAFDRSVMELPSFMVPFQVPDHLDEEAISCVLNMLERNLPPSDILLMAYSPAEELLPDTQAQNDQILDMMIQRYMGNPNVNQDELLKLDWSRKLGESIANSVILPKDQVESLAIEATRQQIIELQSIIAGQEVPVSPRDNDMVHLSVMAQKLMPLIENAPAGSLPPEMVQPLNKALEHFMGHIMQAEAKGMDSKMISQFRSAAQQAFSHLTAGHGTPPPEELMPAAAGGAPSPAAGGRTGRVALGQSREFGKLEGEVPTQFGMVNDVANPPKPPTAG
Ga0255213_1004575	Ga0255213_10045753	F009952	MEVTGQHIRDTQLSLFEARDAVFLARCRAIAADICRQQGSVSINEVRQRVEIPAGMHPSVLGAVFKSKKFKAIGFTEATHPQAHARVVRVYQLTGEGETNGQ
Ga0255213_1005690	Ga0255213_10056904	F063412	RQLEREPVSRFWFGSPCRFVRTIDILVHIVLPEVIEDRHPRFAAYLRRTSPRWGRSWRSW
Ga0255213_1011929	Ga0255213_10119292	F039171	ITDITIINQTVQNNAVLATWPEGYVYGTLREYYIKRHNSDDATMYEAKFQNAWDTVEDQNNLGKWSGGHTRLTSVWQPRQYRQYNIK
Ga0255213_1011936	Ga0255213_10119362	F023838	VTTSHGATIDLDRLIRCIEAREGARWASPGGALQFTRATWSEFSSDPYLRASQPDKARQIARKALFLTIQRMERDGIKPTVWLLALRWNCGYEGMRRRMREPWSYAEHVHNLYYDNDFQ
Ga0255213_1011936	Ga0255213_10119363	F020891	MTFSEHAFAACCHKAKQVGRRLNKDEWLATMQAAYDSYPHGGLLVSDSPKPKKAAPKVVEEGWLEELEANPAYAGIDIRRELGKAQAWASVRGVGVSQRRFINWLNKAMADRPIQYSGAGKTSFAPVQPQGPAEPAGWRDWVRENSADPSHADKPWSALDASAQRYIIAKLNEPPAIHPARPSPSPVLDREEVSDEDVPVARQANAGALLVGSLLRQYR
Ga0255213_1013445	Ga0255213_10134452	F061856	GVLQEGLGHMPADMFNAYLSDLRGEDWVHDFEVSEITLKEQSYTYDISVQITKDRTPKKLKIHVGLYKSPWPELAVSKMKYTGNGYVTK
Ga0255213_1020587	Ga0255213_10205871	F023835	REVDQHRRDMAEIEGNDGVAHGNVSDWLITSGRTLIDKGDELLSLLTLDPDFGKHRDAFMRELKTFRKFYKKWAEKNSD
Ga0255213_1021217	Ga0255213_10212173	F034162	VRWVDATFRLPVAANMPVEVELAGGGTEKRDGVTGDWRPVVRWRTVVDTEPAKRKKKA
Ga0255213_1021378	Ga0255213_10213781	F022657	MAEITTSQIGNGTTAYGSDIVVKDLDLDVSNRVKDDTPVLNMCMSKKRKVNSTLPLWTDDIYRAPAVQAQVEG
Ga0255213_1024560	Ga0255213_10245601	F078620	VVHAASLKNLNSAAAPHDETFMYHGVDGGPIVMFKNRKQWPTPPTKGFTETIDALDNTAQLLSEYQLKEKLPGTGLDEPFEAGADVTGGGTTVAEEAGGSVAPVALVALVAFCIWVEHTNLMDADPGAGLVLLHTLL
Ga0255213_1024883	Ga0255213_10248831	F075787	IVFGRFIQAAYAQCGFNSSCDLKIDNNEITATVDGGTTTMIIGTKTYPLRTFDEPSDVTALIPLGEYNRIFGSVTTIPTGCTDWESLFEYPFSAIIKVTDGKVSVQSRWPKLKTPEIVMSCEAVTSGEGKIVLPDQAIGYMSLCIHPEEAEFIKISFAAKDPSYARFESGPVTLVVEKSDTLSAQPIEKFIKHLEANHFEFQVGPDGILAVNYENVSIRVQLFDGFPTIARCTKTILVDVKCTTELLAEINAMNVGRALNRIWYDNGMVVIGSDLIVHKDMDSVQYTLERLKRESD
Ga0255213_1028274	Ga0255213_10282741	F045066	MGLIKGILIYKYAKRRANKKRDRQAECEQEMLSGSWGDEICEYCGRTNEEHLDDT
Ga0255213_1030554	Ga0255213_10305541	F013615	KDVAAAVFETAGRANANKLGNALGFVGAGRTRLIGPAVYKARRGIEAEMTKMIAKTMRTVQSEL
Ga0255213_1034804	Ga0255213_10348041	F024307	MGRPLKIQKLSTGSSISGGSVSVDLAYPPFSALTNPVVNSADTLDSAQFLGVVGGADPTDTPSATYPRV
Ga0255213_1035841	Ga0255213_10358412	F048844	MRLKLKVDLQDGTAPLELTTNMFVICEWEKTEGRKISDGKGIGYTDLV
Ga0255213_1037043	Ga0255213_10370431	F057897	GINQHLSRVYADRRKRQLARRAVQTWRQAASQARGSAAVCRRVLGRLLNRSVGAAFQCWCEHGAEQKRQRAVILRVAARLRSRWVVVCFERWQQRSAAVRHSVSVVAVGIRRVEQGMARDHLMAWAEAVTESKRKVGVARRVVARLLNQRVCACFDCWVNAVGDARDERAAAEQRAAEEIARKLLLEQCKTGINQHLSRVYADRRKRQLARRAVQTWRQAASQARGSAAVCRR
Ga0255213_1037863	Ga0255213_10378632	F030410	MKVGDIVKSLDFNGIPDCYMLGKVVAVQFDGTFRAKLIERVWQGEVDKKFKTDYFTAPLQGNSFMD
Ga0255213_1038069	Ga0255213_10380692	F079805	MPASTTIEVVGVKQTINSLRKIDPQLQKDFKADATAIAQPAINAGKAVYKDLPLSGMRYAWTQNARKIFPFVPSKAANGVKMRFDTRRNAVGVILIEQKDVAAAVFETAGRANANKLGNA
Ga0255213_1038970	Ga0255213_10389701	F057897	HCSEIVAAGVKRVAHDMARDHLMAWVEAAKESKRSRGVARRVVARLLNQRVSVCFHSWVDAVGCARQERTAAAQRAAEQDARKLLLEQCRKGIVLHLMRVCMIRRHRLLMQDAVESWKHAVSQTRDGAAVCRRVLGRLLHRSVGAAFEGWREHGAEQKRQRAVVMRVAARLRNRWVVVCFECWQHRLAAMRHCSEIVAAGVKRVAHDMARDHLMAWVEAAKESKRS
Ga0255213_1039383	Ga0255213_10393831	F010029	MATYLTASKQLLNNYACISTLEPTDIQVGDSITVGSLSAPFDGTFTVLNCPQYKYTGIDSVTGEWTFDETQPIANQLLYACTGNAVEFVAIYTGTVAFTPTCSWITAANLVTYLGVSITNPSDDYTLITQAVSAGNQFCSRRR
Ga0255213_1041854	Ga0255213_10418541	F059916	TDGSTVSYAGDVTKGVYLWGNLIVQQTNVSPNQFIVPYDQTGEKVIDVLFQAWIDNPAMVTYPRPQGFVVTTEGFQMISTAGGFMGTNGYVSYNTNPANPVYLFYRRAPYTYAGDTFSATATYVAGQYVYYTRTTGAQAGTSDYWKCLSATTAGQDPEDTPSKWELQELPEALSGILVWQTFGDWLTQDGQMEKAASAYQTAELKKLNEWDRIERQ
Ga0255213_1042856	Ga0255213_10428562	F098804	LAAPLNGENEKHLVEIIKRQKDPIRLAEKGYLSNNLGKNNINFLTLLLVRKYLENICHAVNF
Ga0255213_1044334	Ga0255213_10443341	F039097	PLPGNFYGMSVGESVIPMQEYATSAARAEIQLGLLTATPRIGVKPDRLDFEMLQDGEAAIFILDSKFDPSKDIYQIPPPSGNLQFLEVGMNRIQQDTMAMIGMTTPQDVFTPEVMAPGNSGVKLQLALTPNQIIQDNTVRNASEGLKEALWLIWRTLVQYGDDYGVKRLASSCHPEKRPEFLDYLAFDDMNFCDRKHVQIELALGMRSE
Ga0255213_1051834	Ga0255213_10518341	F033790	MAAKLNSEFNYRYQVMGDTVWEKIKHLQNFLVGRKRAEALEQVAELKFQAKKAELQHLKDSNALPHLILNLQAEIIEIESVQEDQKN
Ga0255213_1052346	Ga0255213_10523461	F042299	LKRQPTALLPAPTTPFNTVGGLITLVAGVLQYVFWFVAWADWLGVIGVILGFILTPGVVIFPIIYWIVEGEFPTLYFALMFAGWFGLRLKRG
Ga0255213_1060319	Ga0255213_10603191	F036098	GKIGAVKGEVDVQGKSVIEVLETLAAERKAADDDRKHVQTRLEAVRSEVEAVQAQSAKQAETVSGLLVKVADIEGVKPAVQADMEQLKRQMAEEALGVAGRVESLQAAIEQSGKDQEGLLLASLMKLQEEVDGKIGAVKGEVDVQGKSVIEVLETLAAERKAADDDRKHVQTRL
Ga0255213_1061328	Ga0255213_10613281	F036098	VAGRVESMQAALEQSGKENEGLLLASLMKLQEEVDGKIGAVRGEVDVQGKSMIEVLETLAAERKAAEEDRKQVQTRLESVRSDVEAVQAQSAQQAETVSGLLVKVADFEGVKPAVQADMEQLKRQMAEEAQGVAGRVESMQAALEQSGKENEGLLLASLMKLQEEVDGKIGA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300024285: Freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Law_RepA_8d

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences