3300024285: Freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Law_RepA_8d

Overview

Basic Information

• IMG/M Taxon OID: 3300024285
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133460 | Gp0293406 | Ga0255213
• Sample Name: Freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Law_RepA_8d
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 122108281
• Sequencing Scaffolds: 27
• Novel Protein Genes: 29
• Associated Families: 27

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	14
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	9
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2
All Organisms → cellular organisms → Bacteria	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater river biome → river → river water
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: USA: Louisiana
• Coordinates
  • Lat. (^o): 29.8571
  • Long. (^o): -89.9778
  • Alt. (m): N/A
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009952	Metagenome / Metatranscriptome	310	Y
F010029	Metagenome / Metatranscriptome	309	Y
F013615	Metagenome	269	Y
F020891	Metagenome	221	N
F022657	Metagenome / Metatranscriptome	213	Y
F023835	Metagenome / Metatranscriptome	208	N
F023838	Metagenome	208	N
F024307	Metagenome	206	Y
F030410	Metagenome / Metatranscriptome	185	Y
F031100	Metagenome / Metatranscriptome	183	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0255213_1000012	Not Available	61758
Ga0255213_1004575	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2398
Ga0255213_1005690	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2115
Ga0255213_1011929	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1383
Ga0255213_1011936	Not Available	1383
Ga0255213_1013445	All Organisms → cellular organisms → Bacteria	1290
Ga0255213_1020587	Not Available	998
Ga0255213_1021217	All Organisms → cellular organisms → Bacteria	980
Ga0255213_1021378	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	975
Ga0255213_1024560	Not Available	897

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0255213_1000012	Ga0255213_100001214	F031100	MDVPSILDTAKYRHLVLDGVDSVSTALANLQGFQIPEYDELSLTYYGVTNNIATVVYKKASTPVATLTLTYSVQPPTSNDANLINVSIS
Ga0255213_1000012	Ga0255213_100001225	F031849	MADVLKPLPAIVTDTYANKAPRISDQSKPRKLNLDVVDPSPTSNGDTVDPKTLQVRRTFKDAAQAHSAYRRLKQQNVERNRKNQLIQKKLNNEPPYSAKKLESMGQNWRSNRPTGFLSTMVSRIQPPFKQVIEQAPTLTYTKYPVEGVDSENKTKIFREEITKCIRGWKGHDDIVAQVVHENTTFGFCALCWDDLRDWKPEFLRQDYTFFSIETPQETEATPIWARKRRYQIAELLPVLEDPQMSAMAGWHIKNLVKAINNAIPAGRTLDSDDDARRYEDWIREGSYGASYENDAKYVELGELLVREPNGKISRFLFDDKSGDEICTQIDRYSKMSECLALFSVEIGSGALMSSRGAGRDLYNTHIAVEKARNLVVDNSYLSGMLLLKKGPNAKAGATPLTVHHPVAYIAEGYEVIPQNMPANVQDFLNLDRFISGLAEIQIGTFLPSSALGVRDQKVTASEINRVAAIENQIREGILMRFTKQYSKAVERMQRGICHPEHIKAAAELKTKLDIARQMVPNAVWARADVVDAFDRSVMELPSFMVPFQVPDHLDEEAISCVLNMLERNLPPSDILLMAYSPAEELLPDTQAQNDQILDMMIQRYMGNPNVNQDELLKLDWSRKLGESIANSVILPKDQVESLAIEATRQQIIELQSIIAGQEVPVSPRDNDMVHLSVMAQKLMPLIENAPAGSLPPEMVQPLNKALEHFMGHIMQAEAKGMDSKMISQFRSAAQQAFSHLTAGHGTPPPEELMPAAAGGAPSPAAGGRTGRVALGQSREFGKLEGEVPTQFGMVNDVANPPKPPTAG
Ga0255213_1004575	Ga0255213_10045753	F009952	MEVTGQHIRDTQLSLFEARDAVFLARCRAIAADICRQQGSVSINEVRQRVEIPAGMHPSVLGAVFKSKKFKAIGFTEATHPQAHARVVRVYQLTGEGETNGQ
Ga0255213_1005690	Ga0255213_10056904	F063412	RQLEREPVSRFWFGSPCRFVRTIDILVHIVLPEVIEDRHPRFAAYLRRTSPRWGRSWRSW
Ga0255213_1011929	Ga0255213_10119292	F039171	ITDITIINQTVQNNAVLATWPEGYVYGTLREYYIKRHNSDDATMYEAKFQNAWDTVEDQNNLGKWSGGHTRLTSVWQPRQYRQYNIK
Ga0255213_1011936	Ga0255213_10119362	F023838	VTTSHGATIDLDRLIRCIEAREGARWASPGGALQFTRATWSEFSSDPYLRASQPDKARQIARKALFLTIQRMERDGIKPTVWLLALRWNCGYEGMRRRMREPWSYAEHVHNLYYDNDFQ
Ga0255213_1011936	Ga0255213_10119363	F020891	MTFSEHAFAACCHKAKQVGRRLNKDEWLATMQAAYDSYPHGGLLVSDSPKPKKAAPKVVEEGWLEELEANPAYAGIDIRRELGKAQAWASVRGVGVSQRRFINWLNKAMADRPIQYSGAGKTSFAPVQPQGPAEPAGWRDWVRENSADPSHADKPWSALDASAQRYIIAKLNEPPAIHPARPSPSPVLDREEVSDEDVPVARQANAGALLVGSLLRQYR
Ga0255213_1013445	Ga0255213_10134452	F061856	GVLQEGLGHMPADMFNAYLSDLRGEDWVHDFEVSEITLKEQSYTYDISVQITKDRTPKKLKIHVGLYKSPWPELAVSKMKYTGNGYVTK
Ga0255213_1020587	Ga0255213_10205871	F023835	REVDQHRRDMAEIEGNDGVAHGNVSDWLITSGRTLIDKGDELLSLLTLDPDFGKHRDAFMRELKTFRKFYKKWAEKNSD
Ga0255213_1021217	Ga0255213_10212173	F034162	VRWVDATFRLPVAANMPVEVELAGGGTEKRDGVTGDWRPVVRWRTVVDTEPAKRKKKA
Ga0255213_1021378	Ga0255213_10213781	F022657	MAEITTSQIGNGTTAYGSDIVVKDLDLDVSNRVKDDTPVLNMCMSKKRKVNSTLPLWTDDIYRAPAVQAQVEG
Ga0255213_1024560	Ga0255213_10245601	F078620	VVHAASLKNLNSAAAPHDETFMYHGVDGGPIVMFKNRKQWPTPPTKGFTETIDALDNTAQLLSEYQLKEKLPGTGLDEPFEAGADVTGGGTTVAEEAGGSVAPVALVALVAFCIWVEHTNLMDADPGAGLVLLHTLL
Ga0255213_1024883	Ga0255213_10248831	F075787	IVFGRFIQAAYAQCGFNSSCDLKIDNNEITATVDGGTTTMIIGTKTYPLRTFDEPSDVTALIPLGEYNRIFGSVTTIPTGCTDWESLFEYPFSAIIKVTDGKVSVQSRWPKLKTPEIVMSCEAVTSGEGKIVLPDQAIGYMSLCIHPEEAEFIKISFAAKDPSYARFESGPVTLVVEKSDTLSAQPIEKFIKHLEANHFEFQVGPDGILAVNYENVSIRVQLFDGFPTIARCTKTILVDVKCTTELLAEINAMNVGRALNRIWYDNGMVVIGSDLIVHKDMDSVQYTLERLKRESD
Ga0255213_1028274	Ga0255213_10282741	F045066	MGLIKGILIYKYAKRRANKKRDRQAECEQEMLSGSWGDEICEYCGRTNEEHLDDT
Ga0255213_1030554	Ga0255213_10305541	F013615	KDVAAAVFETAGRANANKLGNALGFVGAGRTRLIGPAVYKARRGIEAEMTKMIAKTMRTVQSEL
Ga0255213_1034804	Ga0255213_10348041	F024307	MGRPLKIQKLSTGSSISGGSVSVDLAYPPFSALTNPVVNSADTLDSAQFLGVVGGADPTDTPSATYPRV
Ga0255213_1035841	Ga0255213_10358412	F048844	MRLKLKVDLQDGTAPLELTTNMFVICEWEKTEGRKISDGKGIGYTDLV
Ga0255213_1037043	Ga0255213_10370431	F057897	GINQHLSRVYADRRKRQLARRAVQTWRQAASQARGSAAVCRRVLGRLLNRSVGAAFQCWCEHGAEQKRQRAVILRVAARLRSRWVVVCFERWQQRSAAVRHSVSVVAVGIRRVEQGMARDHLMAWAEAVTESKRKVGVARRVVARLLNQRVCACFDCWVNAVGDARDERAAAEQRAAEEIARKLLLEQCKTGINQHLSRVYADRRKRQLARRAVQTWRQAASQARGSAAVCRR
Ga0255213_1037863	Ga0255213_10378632	F030410	MKVGDIVKSLDFNGIPDCYMLGKVVAVQFDGTFRAKLIERVWQGEVDKKFKTDYFTAPLQGNSFMD
Ga0255213_1038069	Ga0255213_10380692	F079805	MPASTTIEVVGVKQTINSLRKIDPQLQKDFKADATAIAQPAINAGKAVYKDLPLSGMRYAWTQNARKIFPFVPSKAANGVKMRFDTRRNAVGVILIEQKDVAAAVFETAGRANANKLGNA
Ga0255213_1038970	Ga0255213_10389701	F057897	HCSEIVAAGVKRVAHDMARDHLMAWVEAAKESKRSRGVARRVVARLLNQRVSVCFHSWVDAVGCARQERTAAAQRAAEQDARKLLLEQCRKGIVLHLMRVCMIRRHRLLMQDAVESWKHAVSQTRDGAAVCRRVLGRLLHRSVGAAFEGWREHGAEQKRQRAVVMRVAARLRNRWVVVCFECWQHRLAAMRHCSEIVAAGVKRVAHDMARDHLMAWVEAAKESKRS
Ga0255213_1039383	Ga0255213_10393831	F010029	MATYLTASKQLLNNYACISTLEPTDIQVGDSITVGSLSAPFDGTFTVLNCPQYKYTGIDSVTGEWTFDETQPIANQLLYACTGNAVEFVAIYTGTVAFTPTCSWITAANLVTYLGVSITNPSDDYTLITQAVSAGNQFCSRRR
Ga0255213_1041854	Ga0255213_10418541	F059916	TDGSTVSYAGDVTKGVYLWGNLIVQQTNVSPNQFIVPYDQTGEKVIDVLFQAWIDNPAMVTYPRPQGFVVTTEGFQMISTAGGFMGTNGYVSYNTNPANPVYLFYRRAPYTYAGDTFSATATYVAGQYVYYTRTTGAQAGTSDYWKCLSATTAGQDPEDTPSKWELQELPEALSGILVWQTFGDWLTQDGQMEKAASAYQTAELKKLNEWDRIERQ
Ga0255213_1042856	Ga0255213_10428562	F098804	LAAPLNGENEKHLVEIIKRQKDPIRLAEKGYLSNNLGKNNINFLTLLLVRKYLENICHAVNF
Ga0255213_1044334	Ga0255213_10443341	F039097	PLPGNFYGMSVGESVIPMQEYATSAARAEIQLGLLTATPRIGVKPDRLDFEMLQDGEAAIFILDSKFDPSKDIYQIPPPSGNLQFLEVGMNRIQQDTMAMIGMTTPQDVFTPEVMAPGNSGVKLQLALTPNQIIQDNTVRNASEGLKEALWLIWRTLVQYGDDYGVKRLASSCHPEKRPEFLDYLAFDDMNFCDRKHVQIELALGMRSE
Ga0255213_1051834	Ga0255213_10518341	F033790	MAAKLNSEFNYRYQVMGDTVWEKIKHLQNFLVGRKRAEALEQVAELKFQAKKAELQHLKDSNALPHLILNLQAEIIEIESVQEDQKN
Ga0255213_1052346	Ga0255213_10523461	F042299	LKRQPTALLPAPTTPFNTVGGLITLVAGVLQYVFWFVAWADWLGVIGVILGFILTPGVVIFPIIYWIVEGEFPTLYFALMFAGWFGLRLKRG
Ga0255213_1060319	Ga0255213_10603191	F036098	GKIGAVKGEVDVQGKSVIEVLETLAAERKAADDDRKHVQTRLEAVRSEVEAVQAQSAKQAETVSGLLVKVADIEGVKPAVQADMEQLKRQMAEEALGVAGRVESLQAAIEQSGKDQEGLLLASLMKLQEEVDGKIGAVKGEVDVQGKSVIEVLETLAAERKAADDDRKHVQTRL
Ga0255213_1061328	Ga0255213_10613281	F036098	VAGRVESMQAALEQSGKENEGLLLASLMKLQEEVDGKIGAVRGEVDVQGKSMIEVLETLAAERKAAEEDRKQVQTRLESVRSDVEAVQAQSAQQAETVSGLLVKVADFEGVKPAVQADMEQLKRQMAEEAQGVAGRVESMQAALEQSGKENEGLLLASLMKLQEEVDGKIGA