3300024234: Leaf litter microbial communities from Shasta-Trinity National Forest, California, United States - GEON-DECOMP-237

Overview

Basic Information

• IMG/M Taxon OID: 3300024234
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0132900 | Gp0272142 | Ga0233339
• Sample Name: Leaf litter microbial communities from Shasta-Trinity National Forest, California, United States - GEON-DECOMP-237
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 59148351
• Sequencing Scaffolds: 12
• Novel Protein Genes: 14
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	12

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil And Plant Litter Microbial Communities From Temperate Forests In California, United States
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Leaf Litter → Soil And Plant Litter Microbial Communities From Temperate Forests In California, United States

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): forest biome → litter layer → plant litter
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: USA: California
• Coordinates
  • Lat. (^o): 40.2198
  • Long. (^o): -122.9842
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011735	Metagenome / Metatranscriptome	287	Y
F015054	Metagenome	257	Y
F091248	Metagenome	107	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0233339_1002592	Not Available	1504
Ga0233339_1004834	Not Available	1117
Ga0233339_1006285	Not Available	990
Ga0233339_1007051	Not Available	932
Ga0233339_1008691	Not Available	840
Ga0233339_1008948	Not Available	827
Ga0233339_1009173	Not Available	816
Ga0233339_1013615	Not Available	662
Ga0233339_1017113	Not Available	586
Ga0233339_1018651	Not Available	560
Ga0233339_1019793	Not Available	543
Ga0233339_1021368	Not Available	522

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0233339_1002592	Ga0233339_10025921	F015054	MIGMKVEDHLDGATNFISWKSRVLILEENDLLKLVNEKVPAPDAEEDKTHWRKSDCRARRILVDSVSDQLVPQISQKKTTRNILKP
Ga0233339_1004834	Ga0233339_10048341	F091248	MSRRQKKKAPVVEEQTAIEADLPTEYIYEDTQCVTGVDPEYKWGDIHRMISRREVPDMGLEEEHIYANIEKSAIMKVATRPEMFPCAELMRWILPHTNHGSMLICNVEGQGYASFSPGYVALAYHLPEPQVFLSNEWLDNLRMDLIETIRKMLLPGKLYRHRATEDYDTATLRPPYRFIALMLNRIFGRANGRLFKFEWIPLMFYVATEGTIFNWSGLVSSSLSSCIAAAKGGVQQKKSEFYMSSILIDYIMCHQPFPGLK
Ga0233339_1006285	Ga0233339_10062851	F015054	MIGMEVEDHLDGATNFISCKSRVLIVEENDLLKLVNEKVPEPDAEEDKSHWRKSDCRARRILVDSVSDHLVAQISQKKTTRKILKP
Ga0233339_1007051	Ga0233339_10070511	F091248	MSKRQRKKAPAVEEVPAAEVETKIEYIYEDTQCVTGVEPEYKWGDIYRMISRREVPDMGLEEAPIYANIEKSAIMKVATRPELFPCSELMRWVLPHTNHNSMLICNVDGQGYAAFSPGYVALAYHLPEPQLFLTDRWLDDLRMDFVETLKRMLLPGKIFRHRVTEDYDTATLRPTYRFIALMLNRI
Ga0233339_1008691	Ga0233339_10086912	F015054	MKVEDHLDGATNFISWKSRVLILGENDPLKLVNEKVQEQDVEEDKSHWRKSDARARRILVNSVRDHLVTQILQTKTTMKMFKTLKE
Ga0233339_1008948	Ga0233339_10089481	F015054	MIGMKVEDHLDGATKFISWKSRVLLILEENDLLKLVNEKVPEPEAEEDKSHRRSDARARRIMVDLVRDHLVPQISQKKTSRKMFKILKE
Ga0233339_1009173	Ga0233339_10091731	F015054	MIGMNVEDHFDGATNFISWKSRDLILEGNHLLKLVNGKVQELDAEEDKSHWRKSDVRTRIILVDSVKDHLFPKISQKQTT
Ga0233339_1012160	Ga0233339_10121601	F091248	HREFPDMGLEEEPIYANIEKSAIMKVATRPELFPCSDVMRWILPHTNNNTMLIGNVEGQGYAAFSPGYVALAYHLPEPQIFLSNDWLDNLRMDLVETLKRILLPGKLYRHRATEDYDTASLRAPYRFVALMLNRIFGRASGRLFKFEWVPIMFHVATQGTVFNWASLVSSSLSSCVAAALGGGEARKKSEFYMSSILIDCILCHQPFPGLKCVWDRARMPIYAAYKPLGAHQYH
Ga0233339_1013351	Ga0233339_10133511	F091248	KSAIMKVATRPELFPCSDVMRWILPHTNNNTMLIGNVEGQGYAAFSPGYVALAYHLPEPQVFLSNDWLDNLRMDLVETLRRMLLPGKLYRHRTTEDYDTASLRAPYRFIALMLNRIFGRANGRLFKFEWIPLIFHVATEGTVFNWASLVSSSLSSCVAAALGGGEARKKSEFYMSSILIDCILCNQPFPGLKCVWDRERMPVYAAYKPLWAHQYHSYYREVSE
Ga0233339_1013615	Ga0233339_10136151	F091248	QCVTGVDPEYKWGDIHRMISRREVPDTGLEEEHIYTNIEKSAIMKVATRPEMFPCAELMRWILPHTNHGSMLICNVGGQGYASFSPGYVSLAYHLPEPQVFLSNEWLDSLRMDLIDTMRKMLLPGKLFRHRVTEDYDTATLRPPYRFIALMLNRIFGRANGKLFKFEWIPLMFYVATEGTIFNWSGLVSSSLSSCIAAAKGGVQQRKSEFYMSSILIDCI
Ga0233339_1017113	Ga0233339_10171131	F091248	EVLDTGLEEEHIYTNIEKSAIMKVATRPEMFPCAELMRWILPHTNHGSMLICNVGGQGYASFSPGYVSLAYHLPEPQVFLTNEWLDSLRMNLIDTMRKMLLPGKLFRHRVTEDYDTATLRPPYRFIALMLNRIFGRADGKLFKFEWIPLMFYVATEGTIFNWSGLVSSSLSACIAAAKGGVQQRKSEFYMSSILI
Ga0233339_1018651	Ga0233339_10186512	F015054	MIGMKVEDHLDGATNFISWKPRVLILEENDLLKLVNEKVLEPDAEEDKSHWRKSDAKARRLLVDLVRGHLVLPILQKKMTSKMFKTLKE
Ga0233339_1019793	Ga0233339_10197932	F015054	MIGMKDEDHFDGATNFISRKSRVLILEENDLLKLVNEKVPKPDAEEDKSHWRKSDAKARRILVDSVRDHLVPQIS
Ga0233339_1021368	Ga0233339_10213681	F011735	PYVVKCVLENGAYELVDYEGIALAEPRNGLYLKKYYA