Sample 3300024048

Overview

Basic Information
IMG/M Taxon OID	3300024048 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0114820 \| Gp0255758 \| Ga0222666
Sample Name	Saline water microbial communities from Ace Lake, Antarctica - #655
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	185710747
Sequencing Scaffolds	17
Novel Protein Genes	19
Associated Families	13

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	1
Not Available	11
All Organisms → cellular organisms → Bacteria	1
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae → Marinobacter	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria → unclassified Campylobacterota → Epsilonproteobacteria bacterium JGI 0002006-B18	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Saline Lake Microbial Communities From Various Lakes In Antarctica
Type	Environmental
Taxonomy	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	aquatic biome → saline lake → saline water
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Hypersaline (saline)

Location Information
Location	Antarctica: Ace Lake
Coordinates	Lat. (^o)	-68.4725	Long. (^o)	78.188	Alt. (m)	N/A	Depth (m)	14
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F000388	Metagenome / Metatranscriptome	1201	Y
F010230	Metagenome	306	Y
F029620	Metagenome	187	N
F031722	Metagenome	181	N
F033324	Metagenome	177	Y
F056627	Metagenome / Metatranscriptome	137	N
F067269	Metagenome	125	N
F069687	Metagenome	123	Y
F077964	Metagenome	117	Y
F078142	Metagenome / Metatranscriptome	116	Y
F089824	Metagenome	108	N
F092080	Metagenome	107	Y
F096357	Metagenome	104	N

Family

Category

Number of Sequences

3D Structure?

F000388

Metagenome / Metatranscriptome

1201

F010230

Metagenome

306

F029620

Metagenome

187

F031722

Metagenome

181

F033324

Metagenome

177

F056627

Metagenome / Metatranscriptome

137

F067269

Metagenome

125

F069687

Metagenome

123

F077964

Metagenome

117

F078142

Metagenome / Metatranscriptome

116

F089824

Metagenome

108

F092080

Metagenome

107

F096357

Metagenome

104

Scaffold	Taxonomy	Length	IMG/M Link
Ga0222666_1002736	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	5436	Open in IMG/M
Ga0222666_1017932	Not Available	1580	Open in IMG/M
Ga0222666_1031323	All Organisms → cellular organisms → Bacteria	1074	Open in IMG/M
Ga0222666_1033020	All Organisms → Viruses → Predicted Viral	1032	Open in IMG/M
Ga0222666_1034402	Not Available	1003	Open in IMG/M
Ga0222666_1037354	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae → Marinobacter	946	Open in IMG/M
Ga0222666_1038610	Not Available	924	Open in IMG/M
Ga0222666_1040694	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria → unclassified Campylobacterota → Epsilonproteobacteria bacterium JGI 0002006-B18	889	Open in IMG/M
Ga0222666_1040852	Not Available	887	Open in IMG/M
Ga0222666_1040910	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria → unclassified Campylobacterota → Epsilonproteobacteria bacterium JGI 0002006-B18	885	Open in IMG/M
Ga0222666_1050633	Not Available	755	Open in IMG/M
Ga0222666_1053532	Not Available	725	Open in IMG/M
Ga0222666_1057096	Not Available	691	Open in IMG/M
Ga0222666_1057814	Not Available	685	Open in IMG/M
Ga0222666_1065523	Not Available	624	Open in IMG/M
Ga0222666_1069798	Not Available	593	Open in IMG/M
Ga0222666_1086193	Not Available	504	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0222666_1002736

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium

5436

Open in IMG/M

Ga0222666_1017932

Not Available

1580

Open in IMG/M

Ga0222666_1031323

All Organisms → cellular organisms → Bacteria

1074

Open in IMG/M

Ga0222666_1033020

All Organisms → Viruses → Predicted Viral

1032

Open in IMG/M

Ga0222666_1034402

Not Available

1003

Open in IMG/M

Ga0222666_1037354

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae → Marinobacter

946

Open in IMG/M

Ga0222666_1038610

Not Available

924

Open in IMG/M

Ga0222666_1040694

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria → unclassified Campylobacterota → Epsilonproteobacteria bacterium JGI 0002006-B18

889

Open in IMG/M

Ga0222666_1040852

Not Available

887

885

Not Available

755

Open in IMG/M

Ga0222666_1053532

Not Available

725

Open in IMG/M

Ga0222666_1057096

Not Available

691

Open in IMG/M

Ga0222666_1057814

Not Available

685

Open in IMG/M

Ga0222666_1065523

Not Available

624

Open in IMG/M

Ga0222666_1069798

Not Available

593

Open in IMG/M

Ga0222666_1086193

Not Available

504

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0222666_1002736	Ga0222666_10027363	F078142	MSFEIVAFNSVYSSITIARCQIRIGRTVIAKALCAGIGTLRENTDEGQLGSIDANVRLLATDEPDGEIKTGTVIEILQNGQDEKTGWVKARVGDRFPVGGLTRLALEAVNE
Ga0222666_1017932	Ga0222666_10179323	F033324	MTTPAKRMMEAAKTDALFAAAHAALPGVKRQAELLAKMRRVHYDASIAQGFTPDDALILCMDCLAQE
Ga0222666_1031323	Ga0222666_10313232	F092080	ITIRIPFEIWKDLRELQTVGKISSIQQAAVSGMNKLIESLKWGEQEMRDNLKGAAKKRVLDCLVREKPLGNWEDVHGERTDADADRS
Ga0222666_1033020	Ga0222666_10330201	F096357	LLDRKLFIEPPAEPCGYRHPSVWFLCYQEDLAQAEHERLRAARRQNPSLIHAAALVVAGATGKLSEEQKTMAFYFTRYVEAREYELDQLVRRSTGSHNSAEIRKEEAAERMETAHRLWLKLDTPERDRCAIIAKRMGYPVDTVRKWRRKGWRSG
Ga0222666_1034402	Ga0222666_10344022	F069687	MDELTKKITTILDQFAKEEMQNRLSQFSMIALKEMILNEVKNYKPKNEVIGKDAKK
Ga0222666_1037354	Ga0222666_10373542	F096357	MNNLLDHPIIKRLHRESSVTLTDLLDRKLFIEPPAEPCGHIHPSAWDLFYQEDLQPPESERLRAARKRNPRLILAAALVVASVTGKLSKEQKNMAFDFTRYVEAHEYELVQLVRSRTGGVNTAEKRKEEAAERMETAHRLWLKLDKPERDRCAIIAKRMGYPVDTVRGWKRKGWRSG
Ga0222666_1038610	Ga0222666_10386102	F078142	MSFETEAFNSIYASITIAQCQIRIGRTVVAKALCAGIGTLRENTDEGQFGSIDANVRLLATDEPDGEIKTGAIIEVLQNGQDEKTGWVKARVGGRFPVGGLTRLGLEA
Ga0222666_1040694	Ga0222666_10406941	F010230	PSLVSINGNELRLLQLYQVEVKLVPLLVSINGNELRLVQFCQVEVKLVPLLVSINGNELRLVQFCQVEVKLVPSLVSINGNELRLVQYCQVEVKLVPLLVSINGNELRLVQDRQVKVKSVPLLVSINGNEVRLLQLVQVARK
Ga0222666_1040852	Ga0222666_10408522	F089824	MFTNLSPEEATIAYIIKAYKSFDNTITQYDIADEYMIRQGIEITPRRVRRIIEKLIEKGLPILSSPHYPHAGYCWFTYDSERIECINRLRRKAAKIFIRARRINRNCMAVRDKREKIEQKELFDLHR
Ga0222666_1040910	Ga0222666_10409101	F010230	QFRQVWSKLVPLLVSINGNELRLLQPSQVWLKVVPLLVSINGKELRLLQYRQVKLKLVPLLVSINGKELRLLQLFQVALNLVPLLVSINGNELRLLHSPQVESKLVPLLVSINGNELRLLQNCQVAVKLMPLLVSINGNELRLLQYRQVK
Ga0222666_1050633	Ga0222666_10506331	F029620	MAQQLRMLPASSGGAAQVFPLRQGLIGITSGTVTDPTSGKRPLIAHCVADGSLTLTWQDTSATVVSFIAGDDFSMVEAEAVAVTTGSFHFA
Ga0222666_1053532	Ga0222666_10535322	F077964	KLITIIAILFILSPAVAFCQTAESKSSPPTIQKIAPNSYYYNYNITEVQKEPEGGGEAETFYQYNYVKIKGKPTKRKVLDAIEAAESSTVTAEVEAVATERSTAKTQLADIAALSYAQVDNYVDNTFGNLPAAQKTALKKLYKTVLAMLKQMDLSE
Ga0222666_1057096	Ga0222666_10570962	F067269	MIKSHTGSYTRALDRQLPDSDASFFWDTTDSKKKRKGYRDGLKYDAVSGTKRTRYRGYDIVYTRLKNSSFCAHTIDVLGEGVGF
Ga0222666_1057814	Ga0222666_10578141	F010230	LMPLLVLINGNELRLLQFHQVELKLVPLLVLINGNEVRLVQLFQVWKKLVPLLVLINGNELRLLQFRQVSPKLVPLLVSINAGNEVRL
Ga0222666_1057872	Ga0222666_10578722	F010230	MPLLVLINGNEVRLLQFCQVEKKLVPLLVLINANEVRLLQLYQVWVKLVPLLVLINGNELRLLQLFQVWVKIMPLLVLINGNELRLVQSRQVETKP
Ga0222666_1062087	Ga0222666_10620871	F010230	LLVSINGNELRLVQSRQVELKLMPLLVLINGNEVRLVQLFQVKAKLVPLLVSINGNELRLVQFRQVSPKLVPLLVLINGNELRLVQLYQVKPKLVPLLVSINANEVRLVQSRQVWVKLVPLLVSINGNELRLVQLYQVVSKLVPLLVSINGNELRLVQFRQVEPKLVPLLVSINGNELRLLQLYQVKPKLVPLLVSINANEVRLVQLYQV
Ga0222666_1065523	Ga0222666_10655231	F056627	EIARIEERSTKRQIEAAKLLTNALSGDLRAKVALQEGISSSDIPTVLEPAINVIFLAQYAAEQVVWNQIADEHTADNFGTIRFGDFQVDPSALSSHAGEEFISGGLPAVGEYEEYPAVPFTTTQLDKDFEGKTGIRARMSWESLRRVGNFDMIGQMTSKFAQYAARQEDLALAKLFVTTGGALGSGFSAKGLSGNPALSLDAMQTAMA
Ga0222666_1069798	Ga0222666_10697981	F031722	MHIDETATTQTPTQKVTKPRFYHEQAAAEKLGLSKETLRHWRVGYTVKSKGKRYTYPPKMKDGDGTTWKKEYPAKFSPILWDADFIDTLAS
Ga0222666_1086193	Ga0222666_10861932	F000388	EYFETEEEKVYFFEPLEKEISVEDMQKIVDANERLIKELKDGSNTISE

Scaffold ID

Protein ID

Family

Sequence

Ga0222666_1002736

Ga0222666_10027363

F078142

MSFEIVAFNSVYSSITIARCQIRIGRTVIAKALCAGIGTLRENTDEGQLGSIDANVRLLATDEPDGEIKTGTVIEILQNGQDEKTGWVKARVGDRFPVGGLTRLALEAVNE

Ga0222666_1017932

Ga0222666_10179323

F033324

MTTPAKRMMEAAKTDALFAAAHAALPGVKRQAELLAKMRRVHYDASIAQGFTPDDALILCMDCLAQE

Ga0222666_1031323

Ga0222666_10313232

F092080

ITIRIPFEIWKDLRELQTVGKISSIQQAAVSGMNKLIESLKWGEQEMRDNLKGAAKKRVLDCLVREKPLGNWEDVHGERTDADADRS

Ga0222666_1033020

Ga0222666_10330201

F096357

LLDRKLFIEPPAEPCGYRHPSVWFLCYQEDLAQAEHERLRAARRQNPSLIHAAALVVAGATGKLSEEQKTMAFYFTRYVEAREYELDQLVRRSTGSHNSAEIRKEEAAERMETAHRLWLKLDTPERDRCAIIAKRMGYPVDTVRKWRRKGWRSG

Ga0222666_1034402

Ga0222666_10344022

F069687

MDELTKKITTILDQFAKEEMQNRLSQFSMIALKEMILNEVKNYKPKNEVIGKDAKK

Ga0222666_1037354

Ga0222666_10373542

F096357

MNNLLDHPIIKRLHRESSVTLTDLLDRKLFIEPPAEPCGHIHPSAWDLFYQEDLQPPESERLRAARKRNPRLILAAALVVASVTGKLSKEQKNMAFDFTRYVEAHEYELVQLVRSRTGGVNTAEKRKEEAAERMETAHRLWLKLDKPERDRCAIIAKRMGYPVDTVRGWKRKGWRSG

Ga0222666_1038610

Ga0222666_10386102

F078142

MSFETEAFNSIYASITIAQCQIRIGRTVVAKALCAGIGTLRENTDEGQFGSIDANVRLLATDEPDGEIKTGAIIEVLQNGQDEKTGWVKARVGGRFPVGGLTRLGLEA

Ga0222666_1040694

Ga0222666_10406941

F010230

PSLVSINGNELRLLQLYQVEVKLVPLLVSINGNELRLVQFCQVEVKLVPLLVSINGNELRLVQFCQVEVKLVPSLVSINGNELRLVQYCQVEVKLVPLLVSINGNELRLVQDRQVKVKSVPLLVSINGNEVRLLQLVQVARK

Ga0222666_1040852

Ga0222666_10408522

F089824

MFTNLSPEEATIAYIIKAYKSFDNTITQYDIADEYMIRQGIEITPRRVRRIIEKLIEKGLPILSSPHYPHAGYCWFTYDSERIECINRLRRKAAKIFIRARRINRNCMAVRDKREKIEQKELFDLHR

Ga0222666_1040910

Ga0222666_10409101

F010230

QFRQVWSKLVPLLVSINGNELRLLQPSQVWLKVVPLLVSINGKELRLLQYRQVKLKLVPLLVSINGKELRLLQLFQVALNLVPLLVSINGNELRLLHSPQVESKLVPLLVSINGNELRLLQNCQVAVKLMPLLVSINGNELRLLQYRQVK

Ga0222666_1050633

Ga0222666_10506331

F029620

MAQQLRMLPASSGGAAQVFPLRQGLIGITSGTVTDPTSGKRPLIAHCVADGSLTLTWQDTSATVVSFIAGDDFSMVEAEAVAVTTGSFHFA

Ga0222666_1053532

Ga0222666_10535322

F077964

KLITIIAILFILSPAVAFCQTAESKSSPPTIQKIAPNSYYYNYNITEVQKEPEGGGEAETFYQYNYVKIKGKPTKRKVLDAIEAAESSTVTAEVEAVATERSTAKTQLADIAALSYAQVDNYVDNTFGNLPAAQKTALKKLYKTVLAMLKQMDLSE

Ga0222666_1057096

Ga0222666_10570962

F067269

MIKSHTGSYTRALDRQLPDSDASFFWDTTDSKKKRKGYRDGLKYDAVSGTKRTRYRGYDIVYTRLKNSSFCAHTIDVLGEGVGF

Ga0222666_1057814

Ga0222666_10578141

F010230

LMPLLVLINGNELRLLQFHQVELKLVPLLVLINGNEVRLVQLFQVWKKLVPLLVLINGNELRLLQFRQVSPKLVPLLVSINAGNEVRL

Ga0222666_1057872

Ga0222666_10578722

F010230

MPLLVLINGNEVRLLQFCQVEKKLVPLLVLINANEVRLLQLYQVWVKLVPLLVLINGNELRLLQLFQVWVKIMPLLVLINGNELRLVQSRQVETKP

Ga0222666_1062087

Ga0222666_10620871

F010230

LLVSINGNELRLVQSRQVELKLMPLLVLINGNEVRLVQLFQVKAKLVPLLVSINGNELRLVQFRQVSPKLVPLLVLINGNELRLVQLYQVKPKLVPLLVSINANEVRLVQSRQVWVKLVPLLVSINGNELRLVQLYQVVSKLVPLLVSINGNELRLVQFRQVEPKLVPLLVSINGNELRLLQLYQVKPKLVPLLVSINANEVRLVQLYQV

Ga0222666_1065523

Ga0222666_10655231

F056627

EIARIEERSTKRQIEAAKLLTNALSGDLRAKVALQEGISSSDIPTVLEPAINVIFLAQYAAEQVVWNQIADEHTADNFGTIRFGDFQVDPSALSSHAGEEFISGGLPAVGEYEEYPAVPFTTTQLDKDFEGKTGIRARMSWESLRRVGNFDMIGQMTSKFAQYAARQEDLALAKLFVTTGGALGSGFSAKGLSGNPALSLDAMQTAMA

Ga0222666_1069798

Ga0222666_10697981

F031722

MHIDETATTQTPTQKVTKPRFYHEQAAAEKLGLSKETLRHWRVGYTVKSKGKRYTYPPKMKDGDGTTWKKEYPAKFSPILWDADFIDTLAS

Ga0222666_1086193

Ga0222666_10861932

F000388

EYFETEEEKVYFFEPLEKEISVEDMQKIVDANERLIKELKDGSNTISE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300024048: Saline water microbial communities from Ace Lake, Antarctica - #655

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences