NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300024047

3300024047: Leaf litter microbial communities from Shasta-Trinity National Forest, California, United States - GEON-DECOMP-309



Overview

Basic Information
IMG/M Taxon OID3300024047 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0132900 | Gp0272154 | Ga0233351
Sample NameLeaf litter microbial communities from Shasta-Trinity National Forest, California, United States - GEON-DECOMP-309
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size108747027
Sequencing Scaffolds17
Novel Protein Genes17
Associated Families2

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available17

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSoil And Plant Litter Microbial Communities From Temperate Forests In California, United States
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Leaf Litter → Soil And Plant Litter Microbial Communities From Temperate Forests In California, United States

Alternative Ecosystem Assignments
Environment Ontology (ENVO)forest biome → litter layer → plant litter
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationUSA: California
CoordinatesLat. (o)40.2526Long. (o)-123.026Alt. (m)N/ADepth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015054Metagenome257Y
F091248Metagenome107N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0233351_1012728Not Available1195Open in IMG/M
Ga0233351_1024456Not Available790Open in IMG/M
Ga0233351_1024678Not Available785Open in IMG/M
Ga0233351_1025369Not Available770Open in IMG/M
Ga0233351_1026156Not Available754Open in IMG/M
Ga0233351_1026485Not Available747Open in IMG/M
Ga0233351_1028737Not Available704Open in IMG/M
Ga0233351_1030694Not Available671Open in IMG/M
Ga0233351_1031731Not Available655Open in IMG/M
Ga0233351_1031833Not Available654Open in IMG/M
Ga0233351_1032884Not Available638Open in IMG/M
Ga0233351_1039273Not Available563Open in IMG/M
Ga0233351_1039358Not Available562Open in IMG/M
Ga0233351_1039512Not Available561Open in IMG/M
Ga0233351_1041989Not Available537Open in IMG/M
Ga0233351_1042130Not Available536Open in IMG/M
Ga0233351_1042164Not Available536Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0233351_1012728Ga0233351_10127282F015054MIGMKVEDHLDGATNFISWKSRVLMLGENDPLKLVNEKVQEQDVEEDKSHWRKSDARARRILVNSVRDHLVTQILQTKTTMKMFKTLKE
Ga0233351_1024456Ga0233351_10244561F015054MIGMKVEDNLDGATNFIFWKSIVLILEENDLIKLVNEKVPEPNVEEDKFHWRKSDATARRILVDSARDHLVPQISHKKKTRKMFKTLKE
Ga0233351_1024678Ga0233351_10246781F015054MIGMNVEDHLDGATKFISWKSRVLLILEENDLLKLVNEKVPEPEAEEDKSHRRSDARARRIMVDSVRDHLVPQISQKKTSRKMFKTLKE
Ga0233351_1025369Ga0233351_10253691F015054MIGMKVEKHHDGAINFISSKSRVLILEENDLLKFVNEKVSEPVAEEDKSHWRRSDARARRILVDLVRDHLVPQISQNKTTRKMFKTLK
Ga0233351_1026156Ga0233351_10261561F091248MSKRQKKKAPAVEEVPAPDTEARIEYIYEDTQCVTGVEPEYKWGDIYRMISRREVPDMGLEEAPIYANIEKSAIMKVATRPELFPCSELMRWVLPHTNHNSMLICNIEGQGYAAFSPGYVALAYHLPEPQLFLTNEWLDDLRMDLVETLKRMLLPGKIFRHRVTEDYDTASLRPTYRFIALMLNRIFGRANGRLFKFEWIPLMFFVATEGTIFNWASIVSSNLSSCVAAALEGKERR
Ga0233351_1026485Ga0233351_10264851F015054MIGMKVEKNLYGATNFIFWKSIVLILEENDLLKLVNEKVPEPNVEEDKSRWRKSDARARRILVDSVRDHLVFQISQKKTTGKMFKALKE
Ga0233351_1028737Ga0233351_10287371F015054HLDGATNFISWKSRVLILGENDLLKLVNEKVPEQDVEEDKSHWRKSDARARRILVNSVRDHLVPQILQTKTTMKMFKTLKE
Ga0233351_1030694Ga0233351_10306941F015054MIGMKVDDHHDGATNFISWKSRVLILEENDLLKVVNENVPELVAEEDKSRRRKSDAKARRILVDSVRDHFVSHV
Ga0233351_1031731Ga0233351_10317311F015054MIGMKVEKHHDGAINFISSKSRVLVLEENDLLKFVNEKVPEPVAEEDKSHWRRSGARARRILVDLVRDHLVPQISQNKTTRKMFKTLKE
Ga0233351_1031833Ga0233351_10318331F091248TEYIYEDTQCISGVEPEYKWGDIYRLISRREVPDMGLEEEPIYANIEKSAIMKVATRPELFPCSEVIRWILPHTNTATMLIGNVEVQGYAAFSPGYVALAYHLPEPQIFLSDAWLDNIRMDLIETLKRMLLLGKLYRHRATGEYDTTSLRAPYRFIALMLNRIFGRAHGRLFKFEWIPIMFHVATQGTVFNWASLVSSSLSSCVAAALGGESKKKSE
Ga0233351_1032884Ga0233351_10328841F015054LFKSAGKMIGMKVEDHLDGATNFISWKSRVLILDENDLSKLVNEKFLEAGVDEDKSHWKKSYARARRILVDSVRDHLVPQISRKKTTRKMFKTLK
Ga0233351_1039273Ga0233351_10392731F015054MIGMKVEKHHDGAINFISSKSRFLILEENDLLKFVNEKVPEPVAKEDKSHWRRSDARARRMLVDLVRDHLVPQISQNKTTRKMFKTLKE
Ga0233351_1039358Ga0233351_10393582F015054MIGMKVEDHLDRATNFISWKSRVLILGENDPLKLVNEKVPEKDVEEDKSDWRKSDARARRILVNSVRDHLVHQILQTKATMKMFNTLKE
Ga0233351_1039512Ga0233351_10395121F015054LDENDLLKLVNEKVPKAGAEEDKSHWKRSYARARRILVDSVRDHLVPQISQKKTTRKMFKTLK
Ga0233351_1041989Ga0233351_10419891F015054GATNFIFWKSIVLILEENDLLKLANEKVPEPNVEEDKSHWRKSDARARRILVDSVKDHLVPQMSQKKTTMKMFKTLKE
Ga0233351_1042130Ga0233351_10421301F015054MKVEDHLDGATNFISWKSRVLILEENDLVKLVNEKVLERDVEEDKSHWRKSDAKARKILVDSVRDHLVLPIL
Ga0233351_1042164Ga0233351_10421641F091248MISRREVPDMGLEEAPIYANIEKSAIMKVATRPELFPCSELMRWVLPHTNHDSMLTCNTEGQGYAAFSPGYVALAYHLSEPQLFLTNEWLDDLRMDLVETLKRMLLPGKIFRHRATEDYDTASLRPTYRFIALMLNRIFGRENGRLFKLEWVPLMFFVATEGTIFNWASIVSSSLSSC
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