3300024045: Leaf litter microbial communities from Shasta-Trinity National Forest, California, United States - GEON-DECOMP-285

Overview

Basic Information

• IMG/M Taxon OID: 3300024045
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0132900 | Gp0272148 | Ga0233345
• Sample Name: Leaf litter microbial communities from Shasta-Trinity National Forest, California, United States - GEON-DECOMP-285
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 122490458
• Sequencing Scaffolds: 28
• Novel Protein Genes: 29
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	27
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil And Plant Litter Microbial Communities From Temperate Forests In California, United States
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Leaf Litter → Soil And Plant Litter Microbial Communities From Temperate Forests In California, United States

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): forest biome → litter layer → plant litter
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: USA: California
• Coordinates
  • Lat. (^o): 40.2198
  • Long. (^o): -122.9842
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005599	Metagenome / Metatranscriptome	395	Y
F011735	Metagenome / Metatranscriptome	287	Y
F015054	Metagenome	257	Y
F091248	Metagenome	107	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0233345_1002194	Not Available	1742
Ga0233345_1004194	Not Available	1398
Ga0233345_1007101	Not Available	1142
Ga0233345_1010987	Not Available	955
Ga0233345_1012317	Not Available	911
Ga0233345_1012344	Not Available	910
Ga0233345_1013167	Not Available	884
Ga0233345_1017084	Not Available	789
Ga0233345_1017733	Not Available	776
Ga0233345_1018132	Not Available	768
Ga0233345_1018418	Not Available	763
Ga0233345_1019439	Not Available	744
Ga0233345_1025045	Not Available	662
Ga0233345_1025155	Not Available	660
Ga0233345_1025318	Not Available	659
Ga0233345_1026117	Not Available	649
Ga0233345_1026733	Not Available	643
Ga0233345_1027853	Not Available	630
Ga0233345_1028723	Not Available	621
Ga0233345_1033196	Not Available	581
Ga0233345_1036060	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	558
Ga0233345_1037051	Not Available	551
Ga0233345_1037821	Not Available	545
Ga0233345_1038787	Not Available	539
Ga0233345_1039025	Not Available	537
Ga0233345_1042023	Not Available	519
Ga0233345_1043129	Not Available	513
Ga0233345_1043181	Not Available	513

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0233345_1002194	Ga0233345_10021941	F015054	ATNIISWKSRVLILEENDLLKLVNEKVLEPDVEEDKSHWRKSDAKARRILVDSVRDHFVSHMSQKKTTRKMFKTLTE
Ga0233345_1004194	Ga0233345_10041941	F015054	MIGMKVEDHLDGATNFISWKSRVLILGENGLLKLVNEKVLEQDVEEDKSHWRKSDARARRILVNSVRDHLVPQILQTKTTMKMFKTLKE
Ga0233345_1007101	Ga0233345_10071011	F091248	VEEVSVPEAETKTEYIYEDTQCVTGVEPEYKWGEIYRLISRREVPDMVLEEAPIYANIEKSAIMKVATKPELFPCSEVMKWILPHTNHDTMLICNVEGQGYAAFSPGYVALAYHLPEPQVFLSNEWLDNLRMDLVETMRKMLLPGKLYRHRATEDYDTASLRAPYRFIALMLNRIFGRANGRLFKFEWIPLIF
Ga0233345_1010987	Ga0233345_10109871	F015054	MIGMKVEKNLYGATNFIFWKSIVLILEENDLLKLVNEKVPEPNVEEDKSRWRKSDARARRILVDSVRDHLVPQISQKKTTRKMFKTLNEXXLLMV
Ga0233345_1012317	Ga0233345_10123171	F015054	MIGMKVEDHLNGGTNFISWKSRVLILEENDPLKLINEKVPEPDAEEDKSDWRKSDNRARRILVDLVSDHLVPQILQKKTTRKILKP
Ga0233345_1012344	Ga0233345_10123441	F091248	MSKRQKKKAPAVEEVPAPDTEARIEYIYEDTQCVTGVEPEYKWGDIYRLISRREVPDMGLEEAPIYANIEKSAIMKVATRPELFPCSELMRWVLPHTNHNSMLICNVDGQGYAAFSPGYVALAYHLPEPQLFLTDRWLDDLRMDLVETLKRMLLPGKIFRHRVTEDYDTATLRPTYRFIALMLNRIFGRANGRLFKLE
Ga0233345_1013167	Ga0233345_10131671	F015054	MIGMEVEDHLDGATNFISCKSRVLIVEENDLVKLVNEKVPEPDAEEDKSHWRKSDCRARRILVDSVSDHLVAQISQKKTTRKILKP
Ga0233345_1017084	Ga0233345_10170841	F015054	MIGTKVEDHLDGATNFMSWKSRVLILEENDLLKLVNEKVQKLDSEEDNYHWRKSDARARRILVDSVRDRLVPQISQKKMTKKMFRTLKE
Ga0233345_1017733	Ga0233345_10177331	F015054	MKVEDYLDGATNFISWKSRVLILEEIDFLKLVNAKVPKTNAEEDKSHWRKSDARARRILVDSIRDDLVPQISQKKTTREMFKTLKE
Ga0233345_1018132	Ga0233345_10181321	F015054	MIGMKVEDNLDGATNFIFWMSIVLILEENDLLNLVNEKVPEPNVEEDKFHWRKSDARARRILVDSVRYHL
Ga0233345_1018418	Ga0233345_10184181	F091248	EVEIRIEYIYEDTQCVTGVEPEYKWGDIYRMISRREVPDMGLEEAPIYANIEKSAIMKVATRPELFPCSELMRWVLPHTNHNSMLICNIEGQGYAAFSPGYVALAYHLPEPQLFLTNEWLDDLRMDLVETLKRMLLPGKIFRHRVTEDYDTASLRPTYRFIALMLNRIFGRANGRLFKFEWIPLMFFVATEGTIFNWASIVSSNLSSCVAAALEGKERRRSEFYMSSILIDCILCHQPFPGLKCVWEKDRMPVY
Ga0233345_1019439	Ga0233345_10194391	F015054	FISWKSRVLILEENDLLKLVNEKVPEPDAKEDKSHWRKSDCRARRILVDSVSDHLVPQISQKKTTRKILKP
Ga0233345_1025045	Ga0233345_10250451	F091248	EEVKSTMSKRQKKKAPVVEEVPEAGAETKTEYIYEDTQCVSGVEPEYKWGEIYRLISRREVPDTGLEEESIYANIEKSSIMKVATRPELFPCSEVIGWILPHVNTTTMIIGNAEGQGYAAFSPGYVALAYHLPKAQVFLSDDWLDSIRMDLVETLKKMLLQGKLYRYRQTGEYDTASLRAPYRFIALMLNRIFGRAHGKLFKLEWIPIIFHVATQGIVFN
Ga0233345_1025155	Ga0233345_10251551	F015054	MIGMKVEDHLDGATNFISWKSRVLILDENDLSKLVNEKFLEAGVDEDKSHWKKSYARARRILVDSVRDHLVPQISR
Ga0233345_1025318	Ga0233345_10253181	F015054	MIGMKVEDRLDGATNFLSWKPKVLFILEENDLLKFVNEKVPEPEAEEDKSQWRKCDAKARRILVDSIKDHLVPQISEKKT
Ga0233345_1026117	Ga0233345_10261171	F015054	LEKIDFLKLVNKKVQKPNAEKVKFHWRKSDARARRILVDSIRDDLVPQISQKKTREMFKTLKE
Ga0233345_1026733	Ga0233345_10267331	F011735	LGVGKFNPMWHGPYVVKCVLEKGAYELVDYEGTTLAELRNGLYLK
Ga0233345_1027853	Ga0233345_10278531	F015054	RVLILGENDLLKLVNENVPEQDVEEDKSHWRKSDARARRILVNSVRDHLVPQILQTKTTMKMFKTLKEW
Ga0233345_1028723	Ga0233345_10287232	F015054	MIGMKVEDHLDRATNFISWKSRVLILEENDLLKLVNEKVLEPDAEEDKSHSRKSNARARRILVDSVRDHMVPQISQKKTIMKMFKTLKE
Ga0233345_1030596	Ga0233345_10305961	F091248	ILPHKNHGSMLICNVEGQGYASFSPGYVALAYQLPEPQIFLSNEWLDNLRMDLIETMRKMLLPGKLYRHRATEDYDTATLRPPYRFIALMLNRIFGRANGRLFKFEWIPLMFYVATEGTIFNWSGLVSSSLSSCIAAAKGGVQQKKSEFYMSSILIDCIICHQPFPGLKCVWDRNRMPVYAAFKLLGAHQYHSYYREICE
Ga0233345_1033196	Ga0233345_10331961	F091248	VVKEGPEVEVVTKTEYIYEDTQCVSGVEPEYKWGEIYRLISRREVPDMGLEEEPIYANIEKSSIMKVATRPELFPCSEVIGWILPHVNTTTMIIGNAEGQGYAAFSPGYVALAYHLPEPQVFLSDDWLDNIRMDLVETLKKMLLQGKLYRYRQTGEYDTASLRAPYRFIALMLNRIFGRA
Ga0233345_1036060	Ga0233345_10360601	F005599	GRAIQRAVTSVKPEQASKVMMRMPIHLNDGEGSMSGEAIDTRTRSIRRGNGHGTPER
Ga0233345_1037051	Ga0233345_10370511	F091248	EYKWGDVYRMISRREVLDMGLEEAPIYANIEKSAIMKVATRPELFPCSELMRWVLPHTNHNSMLTCNTEGQGYAAFSPGYVALAYHLREPQLFLTNEWLDDLRMDLVETLKRMLLPGKIFRHRATEDYDTASLRPTYRFIALMLNRIFGRANGRLFKLEWVPLMFFVATEGTIFNWASIVSSS
Ga0233345_1037821	Ga0233345_10378211	F015054	MIGMKVEDHLDGATNFISWKYRVLILGENDLLKFVNEKVREQDVEEDKSHWRKSDARARRILVNSVRDHLVRQILQTKTTMKM
Ga0233345_1038787	Ga0233345_10387871	F091248	RHTDRIYIYEDTQCVSGVEPEYKWGEIYRLISRREVPDMGLEEEPIYANIEKSAIMKVATRPELFPCSDVMRWILPHTNNNTMLIGNVEGQGYAAFSPGYVALAYHLPEPQVFLSNDWLDNLRMDLVETLRRMLLPGKLYRHRTTEDYDTASLRAPYRFIALMLNRIFGRANGRLFKFE
Ga0233345_1039025	Ga0233345_10390251	F015054	LDGATNFIFWKSIVLILEENDLIKLVNEKVPEPNVEEDKFHWRKSDATARRILVDSARDHLVPQISHKKTTRKMFKTLKE
Ga0233345_1042023	Ga0233345_10420231	F015054	EENDLLKLVNEKVPEPDAEEDKSHWRKSDGRARRMLVDSVRDHLVPQISQKKTTRKMFKTLKE
Ga0233345_1043129	Ga0233345_10431291	F091248	CVTGVEPEYKWVDIYRMISRREVPDMGLEEAPIYANIEKSAIMKVATRPELFPCSELMRWVLPHTNHNSMLICNVDGQGYAAFSPGYVALAYHLPEPQLFLTDRWLDDLRMDFVETLKRMLLPGKIFRHRVTEDYDTATLRPTYRFIALMLNRIFGRENGRLFKLEWVPI
Ga0233345_1043181	Ga0233345_10431811	F011735	MVKHVLEKGAYELVDYEGMALAEPRNGLYLKKYYAXSSARA