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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300023715 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0118397 | Gp0213396 | Ga0257075 |
| Sample Name | Goat fecal pellet fungal communities from Santa Barbara, California, USA ? diluted pellet 3 Spades (v3) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 564286104 |
| Sequencing Scaffolds | 16 |
| Novel Protein Genes | 18 |
| Associated Families | 14 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → unclassified Faecalibacterium → Faecalibacterium sp. CAG:74_58_120 | 1 |
| Not Available | 8 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium | 1 |
| All Organisms → cellular organisms → Bacteria | 2 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriaceae → Eubacterium → Eubacterium plexicaudatum | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → environmental samples → Firmicutes bacterium CAG:884 | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Determining The Genomic Basis For Interactions Between Gut Fungi And Methanogenic Archaea |
| Type | Host-Associated |
| Taxonomy | Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Goat Feces → Determining The Genomic Basis For Interactions Between Gut Fungi And Methanogenic Archaea |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Host-associated → Animal → Animal distal gut |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: California | |||||||
| Coordinates | Lat. (o) | 34.4204 | Long. (o) | -119.6671 | Alt. (m) | N/A | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F011633 | Metagenome | 288 | Y |
| F013656 | Metagenome | 269 | Y |
| F044232 | Metagenome | 154 | Y |
| F059515 | Metagenome | 133 | Y |
| F061388 | Metagenome | 132 | N |
| F061415 | Metagenome | 131 | Y |
| F063222 | Metagenome | 129 | N |
| F072921 | Metagenome / Metatranscriptome | 120 | Y |
| F075508 | Metagenome | 118 | Y |
| F076682 | Metagenome | 117 | Y |
| F086383 | Metagenome / Metatranscriptome | 110 | N |
| F094637 | Metagenome | 105 | N |
| F100155 | Metagenome | 102 | Y |
| F100397 | Metagenome | 102 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0257075_10029417 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → unclassified Faecalibacterium → Faecalibacterium sp. CAG:74_58_120 | 1172 | Open in IMG/M |
| Ga0257075_10063185 | Not Available | 928 | Open in IMG/M |
| Ga0257075_10069226 | Not Available | 901 | Open in IMG/M |
| Ga0257075_10080157 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium | 858 | Open in IMG/M |
| Ga0257075_10094148 | Not Available | 813 | Open in IMG/M |
| Ga0257075_10110702 | All Organisms → cellular organisms → Bacteria | 770 | Open in IMG/M |
| Ga0257075_10118832 | All Organisms → cellular organisms → Bacteria | 752 | Open in IMG/M |
| Ga0257075_10126369 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes | 736 | Open in IMG/M |
| Ga0257075_10135210 | Not Available | 719 | Open in IMG/M |
| Ga0257075_10154369 | Not Available | 688 | Open in IMG/M |
| Ga0257075_10192315 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriaceae → Eubacterium → Eubacterium plexicaudatum | 638 | Open in IMG/M |
| Ga0257075_10235444 | Not Available | 593 | Open in IMG/M |
| Ga0257075_10281244 | Not Available | 554 | Open in IMG/M |
| Ga0257075_10291218 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → environmental samples → Firmicutes bacterium CAG:884 | 547 | Open in IMG/M |
| Ga0257075_10298323 | Not Available | 541 | Open in IMG/M |
| Ga0257075_10338142 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia | 514 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0257075_10029417 | Ga0257075_100294172 | F061388 | MPEGGADMGGRGGSSHRQTAGGTAAIQTFLQNAYGANHANAVLAILQNAPAHIRALWEQYAAQFRATNMRRDEGAFYSPRDDSVHLHIPSVARGDAISTPYSVLFHEYGHMTDYLIARTHNQGNYSAYSDLFQGIGSDGKAIIRSGSSGGLLGRTAKDELEGHLARMRRQNPNLNRQQAARALVSEANSKYSYQDRSDISDMFEGAGLGIAHPLGAGHGLDYWSSRGNSREIFAEIISAEAAHPGSLKAIKEYFPRTYQVYQDMMKARKKR |
| Ga0257075_10063185 | Ga0257075_100631852 | F100397 | MMKKLIAIIALSLSLILCLTACGSKMPYDLSGTASIELHAYDTDSTEPFAKIVVDGEDVATIVEMFSSLKLKEMKYTEPSINGYDFWFKDADGNEIAKLSLPYGPSPWVVVKGTAYQDVNGGVDLNYLAQLVDVTVSAGPMQPEDGADHNAPVEPLFYKSAPGLSVQHDGQSVRALKGTSSWTYMNPDGTSTGIEADSMHPLDAKEYMPVLPAVEGEVSLVFKTAPDE |
| Ga0257075_10069226 | Ga0257075_100692262 | F044232 | MKRFISVFLLFLFLLSLFPATAFAAEENDISQFEFPTPKAPNYFIYTDGDASEASHDDLRMIMVADPEVALLAAEYTADSEAFYEKYGLWSFEIVMQYDVSLDGEDNWQHHAEWDTEYYTGGYADGY |
| Ga0257075_10080157 | Ga0257075_100801571 | F059515 | EDKPFTDTYGYEFCCKIVDASYTIIKAEELSADMALWQKIAESDVVNDIYKMYDYVNFLCSWPTYYVNNFTDENGNEVKGYYLYAADAENFVYQDGAQYNYGYQEGYFDSIIAKIESVDPSAFADLVANIRKAEALAQEALAELENGNYTSEYQYVEMFGQEDYVYTLNKGDELAARMNEIYTEFANWLGSWEM |
| Ga0257075_10094148 | Ga0257075_100941482 | F072921 | FIEIRWNCDACPDSLLLTIDSGYKCDTIAVADSGSTRILMSRSKGKTVITLKAVISGKKVTESVDIRIKNSKGTTARATSGISRTKIWKEKMQAKWYVFRAQCKYWWLSQKKWQKALWIALLALWLGLLLSSIGRKPEVNVSSDQVQTACLM |
| Ga0257075_10110702 | Ga0257075_101107021 | F100155 | MTLNEMIYHRKSCRSFTGVPVDAATIETIKAFPMKPLYPEIKVHWDIVPRNQVKCICPWTTP |
| Ga0257075_10118832 | Ga0257075_101188321 | F061415 | MYKIFKITSSHVVDFAAEELKKYLRMMMPRCGEIAISYDPKAKDGFRLGLMQD |
| Ga0257075_10126369 | Ga0257075_101263692 | F061415 | MYQIFKITSDPVVDFAAEELKKYLRMMMPRCGEIGISYKPDATEGFRLG |
| Ga0257075_10135210 | Ga0257075_101352102 | F072921 | MKNRLSLHTDRKSASEGEYIEIRWSCDACPDSLHLTIDSGYKCDTIAVADSGSTRIMMSRSKGKTVITLKAVISGKKVTESVEIRIRNSKGTTARTASGISKTKIWKEKMLAKWYVFRAQMKYWWLSQKKWQKALWIALLIIWLGMLIASFMNSPEPKVSSGQVQTAYLRRFETSGLCLKMCLWQN |
| Ga0257075_10154369 | Ga0257075_101543691 | F086383 | LDRSITYNHQNFSNYDIVIWQTSILSSYAFHTNPEVKPSFIKTVNKFFPSMDIIVVVQPLQEDNQIIQKFNDLIQQFNNVYPVNFVRGGVDLTFKEAIETIFEVLPTCNWCGRLFTKTIHFKKYCSNKCKDYAKEEQNRQNFRNYYKRYKDTMSEAQKGALGSRGANLHAHANTDHEVEARLISNEKKRLGL |
| Ga0257075_10192315 | Ga0257075_101923151 | F094637 | MRISELESKLRKHAETTKSVMQAPFDLNEEIKNMEVHTMSKPKITMKRTLALVAVLALCIITVTMTPLANSIKGFFSDIVRFDGAITGTKYENATNDIKVDVLESTSENGSVIIPLDLTFENPTEAPFPYNQEVAVSEYKILDSNNKEIIKTKVSEEGGDKGTVSNGKVLVNLSLNDAKLKSGEEYTIVIEKMYGLAKADAPLHIT |
| Ga0257075_10216026 | Ga0257075_102160261 | F063222 | MINDAYNFKQYAVKAHGLLVSDGLDAADAKRALEIFFKTFGFPGYREMDQSKVSTVSDTISENFTAEYEGEVQNGKEYGVGTRTCYSNGKWCSYDECVWIDGVMCGYDYAKELEFGAFEDQKIGFVVNDNFVGNIRIIPAGDSEPFDDTVKKFSVKSVK |
| Ga0257075_10235444 | Ga0257075_102354441 | F100397 | PMKRILILALSLSLLLCLTACGSKMPYDLSGTASIELHAYDTDSTEPFAKIVVDGDEVATIVEMFSSLKLKELDYTEPSIKGYDFWFKDADGNEIAKLSLPYRLSPWVVFKGTAYQDVNGGVDVDYLAQLVDMAVSAGPMQPEDGAGDNESVEPLFYKSAPGLSVQHDGQSVRALKGTSSWTYMNPDGTSTGIEADS |
| Ga0257075_10281244 | Ga0257075_102812441 | F075508 | MANYQGLNCIMGEITSMVSDEKNSIHEQHIYDYFSATEKLIRTTVPQLFMDCMEQFEQQLVVEFETYLNGQKIHHDQIAEAIGDILKKSIGDAMKNLKITL |
| Ga0257075_10291218 | Ga0257075_102912182 | F013656 | NKCETETTINVMYSEKILSIYTNKVDLQRRLYKILGEPKKEYIKGRSVVGSCWEIPLTDVSKINKIILKADLYGM |
| Ga0257075_10298323 | Ga0257075_102983232 | F100155 | MNLNEMIFKRKSCRSFTNAPVDAATIETVKAFPMKPLYPEIKVCWDIV |
| Ga0257075_10315724 | Ga0257075_103157241 | F076682 | MVADPEVALLAAEYDRDSDAFYQKYGLYSFEISMQYDVSLDGEGNWQHNEEWDTNWYTAGYAEGYPYVSLRGKMMEDFEFFWLTYYEGEGSGTFVPYQSAITTYVKHHEDWEENIYSFDVENHSLYIRCRYYMEWETFDAANNEIGTKQSKFSDWSESAVFGKNSTQIVPDAPTT |
| Ga0257075_10338142 | Ga0257075_103381421 | F011633 | EEIRSISLQRAAAFFREQEDVAEESANVFLFRSCRIVLNETKTRGVGILAAKRLHLRMEGEDTDVETIYHRFFVQFLSM |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |