3300023714: Goat fecal pellet enrichment culture fungal communities from Isla Vista, California, USA - Xylan, Gen0, Rep 1 Spades (v2)

Overview

Basic Information

• IMG/M Taxon OID: 3300023714
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118397 | Gp0213388 | Ga0257073
• Sample Name: Goat fecal pellet enrichment culture fungal communities from Isla Vista, California, USA - Xylan, Gen0, Rep 1 Spades (v2)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 393932418
• Sequencing Scaffolds: 8
• Novel Protein Genes: 8
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → unclassified Faecalibacterium → Faecalibacterium sp. CAG:74_58_120	2
Not Available	6

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Determining The Genomic Basis For Interactions Between Gut Fungi And Methanogenic Archaea
• Type: Host-Associated
• Taxonomy: Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Goat Feces → Determining The Genomic Basis For Interactions Between Gut Fungi And Methanogenic Archaea

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: USA: California
• Coordinates
  • Lat. (^o): 34.4148
  • Long. (^o): -119.8405
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F058575	Metagenome / Metatranscriptome	134	Y
F061388	Metagenome	132	N
F072921	Metagenome / Metatranscriptome	120	Y
F076682	Metagenome	117	Y
F078046	Metagenome	116	Y
F084822	Metagenome	112	Y
F100397	Metagenome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0257073_1021879	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → unclassified Faecalibacterium → Faecalibacterium sp. CAG:74_58_120	1126
Ga0257073_1023503	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → unclassified Faecalibacterium → Faecalibacterium sp. CAG:74_58_120	1082
Ga0257073_1049444	Not Available	728
Ga0257073_1050198	Not Available	722
Ga0257073_1067336	Not Available	621
Ga0257073_1068207	Not Available	617
Ga0257073_1068499	Not Available	616
Ga0257073_1079671	Not Available	572

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0257073_1021879	Ga0257073_10218791	F061388	RSFSLVMSRLPAKAISNGMILSTKRFMPEGGADMGGRGGSSHRQTAGGTVAIQTFLQNAYGANHANAVLAILQNAPAHIRALWEQYASQFRATNMRRDEGAFYSPRDDSVHLHIPSVARGDAISTPYSVLFHEYGHMTDYLIARGEGYSHTSYSDIFQGVGAGGKPILRRGSAGGLLGRTAKDELEGHLSRMRRQNPNMTREQAARALVSEARGKYSMLDRSDISDMFEGAGLGISHPLGAGHGLDYWSSRGNGKEIFAEIISAEAAHPGSLKAIKEYFPKTYQVYQDMVKARKKK
Ga0257073_1023503	Ga0257073_10235031	F061388	ALWEQYASQFRATNMRRDEGAFYSPRDDSVHLHIPSVARGDAISTPYSVLFHEYGHMTDYLIARTHNQGNYSAYSDLVQGIGSDGKAIIRSGSSGGLLGRTAKDELEGHLARMRRQNPNLNRQQAARALVSEANSKYSYRDRSDISDMFEGAGLGIAHPLGAGHGLDYWSSRGNSREIFAEIISAEAAHPGSLKAIKEYFPRTYQVYQDMMKARKKR
Ga0257073_1049444	Ga0257073_10494441	F084822	MARYDENAYNWLKRKGLAEKYEHAGIYCIKIDEKIVYIGKSHNMLKRVAQHYAGI
Ga0257073_1050198	Ga0257073_10501981	F058575	DQLRRNNRFSDAINLYRAAAAAPDATEELRRRSLASVELMQEINGFVNTDLMNP
Ga0257073_1067336	Ga0257073_10673361	F072921	MKKKMTLSTDRKSASEGEYLDIRWECNACPDSLYLSVNSGYQQYSIAVADNGSTRLAMGRSKGKTTISLIGVISGKKVTESVEIRIRNRKESRNTKAPLSARMKAFGEKMQAKWYVFRAQCKYWWLSQKKWQKALWIALLALWLGLLFSSIG
Ga0257073_1068207	Ga0257073_10682071	F076682	YFVYTDGNASEGDHDHLRMIMVADPEVALLAAEYDRDSEAFYKKYGLYSFNLVMQYDVSLDGEDSWQHNEEWDTEYYNDGHVNGYPVQSLRSELIEDFEFFWLTYYEGPDSDTFVPYKPAILTEKFTGDGYEQDTYSFDVENHSLYIRCRYYMEWETFDAEKNEIGEKQSKFSDWSESAVFGKNGTQITPDEPTTYAAPIISDMK
Ga0257073_1068499	Ga0257073_10684991	F078046	GEVFCVSGIAADEIKYVYEQLKDRYDLLLTTTFALDNGFTIDRPIVVGKAHGQIIWLYKDRGMFIMDVMDAEQTMGTHWHPDDTQEAVNDIAEFMDGKSDYDMIPYGQV
Ga0257073_1079671	Ga0257073_10796711	F100397	KLKELDYTEPSIKGYDFWFKDADGNEIAKLSLPYRLSPWVVFKGTAYQDVNGGVDVDYLAQLVDMAVSAGPMQPEDGAGDNESVEPLFYKSAPGLSVQHDGQSVRALKGTSSWTYMNPDGTSTGIEADSMHPLDAKEYMPVLSAVKGEARLVYDTAPDEITVKAWPVSMWGNLDAVDEAIAVPVSGEKIT