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Sample 3300023713
3300023713: Goat fecal pellet enrichment culture fungal communities from Isla Vista, California, USA - Xylan, Gen0, Rep 2 Spades (v3)
Overview
Basic Information
IMG/M Taxon OID 3300023713 Open in IMG/M GOLD Reference Gs0118397 | Gp0213389 | Ga0257074 Sample Name Goat fecal pellet enrichment culture fungal communities from Isla Vista, California, USA - Xylan, Gen0, Rep 2 Spades (v3) Sequencing Status Permanent Draft Sequencing Center DOE Joint Genome Institute (JGI) Published? N Use Policy Open
Dataset Contents
Total Genome Size 349839258 Sequencing Scaffolds 4 Novel Protein Genes 4 Associated Families 4
Dataset Phylogeny
Taxonomy Groups Number of Scaffolds All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Butyricicoccus → Butyricicoccus pullicaecorum 1 Not Available 2 All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales 1
Ecosystem and Geography
Ecosystem Assignment (GOLD)
Name Determining The Genomic Basis For Interactions Between Gut Fungi And Methanogenic Archaea Type Host-Associated Taxonomy Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Goat Feces → Determining The Genomic Basis For Interactions Between Gut Fungi And Methanogenic Archaea
Alternative Ecosystem Assignments
Environment Ontology (ENVO) Unclassified Earth Microbiome Project Ontology (EMPO) Host-associated → Animal → Animal distal gut
Location Information
Location USA: California Coordinates Lat. (o ) 34.4148 Long. (o ) -119.8405 Alt. (m) N/A Depth (m) 0 Location on Map
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Associated Families
Family Category Number of Sequences 3D Structure?
F052303 Metagenome 142 Y F084822 Metagenome 112 Y F096172 Metagenome / Metatranscriptome 105 Y F100397 Metagenome 102 N
Sequences
Scaffold ID Protein ID Family Sequence
Ga0257074_1032382 Ga0257074_10323822 F084822 MATYEDNAYNWLKRKGLADKYEHAGIYCIKIDDKIVYIGKSAN Ga0257074_1039457 Ga0257074_10394571 F100397 HHDLGKWLCRVISVELHAYNNDSTEPFAKIVVDGEDVGDIVEMFSSLKLKELDYTEPSINGYDFWFKDAEGNEIAKLSLPYGPSPWVVVKGTAYQDVNGGVDVDYLAQLVDMAVSAGPMQPEDGAGDNESVEPLFYKSAPGLSVQHDGQSVRALKGTSSWTYMNPDGTSTGIEADSMHPLDAKEYMPVLPAVEGEVSLVFKTAPDEVTVKAWPVSEWSNLDAVDEAIAVPVSGEKIT Ga0257074_1040538 Ga0257074_10405382 F052303 MNVVWIILAVLSFIGGQVYLFYLLRKLDKFLERRPSNEPTFTYDDSCRYPEDVVE Ga0257074_1072952 Ga0257074_10729521 F096172 LHLSDIYSLMLFILFKVQEIPEYAVISELCYLLDGANMTRLLTYFAGKTVTFPTEAEMAIVTNALLMYQYINIDGETFTAAQNKLGKLTKKEKDDVTELYVQLLPIMKQYNIDRSQIQKS
