Sample 3300023684

Basic Information
IMG/M Taxon OID	3300023684 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0128948 \| Gp0290741 \| Ga0247523
Sample Name	Metatranscriptome of spruce roots microbial communities from Bohemian Forest, Czech Republic - CRE2 (Metagenome Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Sample Name

Metatranscriptome of spruce roots microbial communities from Bohemian Forest, Czech Republic - CRE2 (Metagenome Metatranscriptome)

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	26902504
Sequencing Scaffolds	25
Novel Protein Genes	25
Associated Families	23

Dataset Contents

Total Genome Size

26902504

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Amabiliviricetes → Wolframvirales → Narnaviridae → Narnavirus → unclassified Narnavirus → Plasmopara viticola lesion associated narnavirus 22	2
Not Available	23

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Amabiliviricetes → Wolframvirales → Narnaviridae → Narnavirus → unclassified Narnavirus → Plasmopara viticola lesion associated narnavirus 22

Not Available

Ecosystem Assignment (GOLD)
Name	Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Ecosystem Assignment (GOLD)

Name

Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Type

Environmental

Taxonomy

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

Unclassified

Earth Microbiome Project Ontology (EMPO)

Free-living → Non-saline → Soil (non-saline)

Location Information
Location	Czech Republic: South Bohemian Region
Coordinates	Lat. (^o)	49.044	Long. (^o)	13.617	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

Czech Republic: South Bohemian Region

Coordinates

Lat. (^o)

49.044

Long. (^o)

13.617

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F003383	Metagenome / Metatranscriptome	490	Y
F004183	Metagenome / Metatranscriptome	449	Y
F007311	Metagenome / Metatranscriptome	353	Y
F009688	Metagenome / Metatranscriptome	314	Y
F010305	Metagenome / Metatranscriptome	305	Y
F010404	Metagenome / Metatranscriptome	304	Y
F018876	Metagenome / Metatranscriptome	232	Y
F018933	Metagenome / Metatranscriptome	232	N
F022827	Metagenome / Metatranscriptome	212	Y
F024793	Metagenome / Metatranscriptome	204	Y
F025423	Metagenome / Metatranscriptome	201	Y
F030305	Metagenome / Metatranscriptome	185	N
F030619	Metagenome / Metatranscriptome	184	Y
F036126	Metagenome / Metatranscriptome	170	Y
F036577	Metagenome / Metatranscriptome	169	Y
F037019	Metagenome / Metatranscriptome	168	Y
F044777	Metagenome / Metatranscriptome	154	Y
F058155	Metagenome / Metatranscriptome	135	Y
F068474	Metagenome / Metatranscriptome	124	Y
F080063	Metagenome / Metatranscriptome	115	N
F089618	Metagenome / Metatranscriptome	108	N
F091140	Metagenome / Metatranscriptome	107	Y
F102319	Metagenome / Metatranscriptome	101	Y

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0247523_101391	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Amabiliviricetes → Wolframvirales → Narnaviridae → Narnavirus → unclassified Narnavirus → Plasmopara viticola lesion associated narnavirus 22	2203	Open in IMG/M
Ga0247523_101434	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Amabiliviricetes → Wolframvirales → Narnaviridae → Narnavirus → unclassified Narnavirus → Plasmopara viticola lesion associated narnavirus 22	2178	Open in IMG/M
Ga0247523_107346	Not Available	1049	Open in IMG/M
Ga0247523_109236	Not Available	891	Open in IMG/M
Ga0247523_110444	Not Available	813	Open in IMG/M
Ga0247523_110614	Not Available	804	Open in IMG/M
Ga0247523_110846	Not Available	793	Open in IMG/M
Ga0247523_111507	Not Available	750	Open in IMG/M
Ga0247523_111728	Not Available	738	Open in IMG/M
Ga0247523_111925	Not Available	727	Open in IMG/M
Ga0247523_112141	Not Available	717	Open in IMG/M
Ga0247523_112816	Not Available	684	Open in IMG/M
Ga0247523_115160	Not Available	587	Open in IMG/M
Ga0247523_115500	Not Available	578	Open in IMG/M
Ga0247523_116596	Not Available	546	Open in IMG/M
Ga0247523_117085	Not Available	532	Open in IMG/M
Ga0247523_117605	Not Available	520	Open in IMG/M
Ga0247523_117624	Not Available	519	Open in IMG/M
Ga0247523_117947	Not Available	511	Open in IMG/M
Ga0247523_117998	Not Available	510	Open in IMG/M
Ga0247523_118096	Not Available	508	Open in IMG/M
Ga0247523_118178	Not Available	506	Open in IMG/M
Ga0247523_118220	Not Available	505	Open in IMG/M
Ga0247523_118342	Not Available	503	Open in IMG/M
Ga0247523_118370	Not Available	502	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0247523_101391	Ga0247523_1013911	F030619	MSPLQQVWTACWSGLVLSGWDSMRVAWFLHQWTCRSAPRGVAYQVDCVKKLCHNVRGASLHSKRWKIQPCGIREDVVDCLCRLAVRSPENGFAFSRLSRSLPEPPAREAIRHLQSAAELASAPFPTSAAALESLRSFVSLSKRARRNPRAPRRLPSSSSSCLEWPATRGGIDGYLEHLGHMCEEAGATQSSFHAYAGDSLGGFCLQKASVVLRPCAGVAADLRESYRCAGLLYLRSQGKPFGMKATALRTPGYKVRVVGVPDCLTFVEGSWVRSSLRWLAPGHWRIDGESRKIPGGLHYRAGRRFASLDLSKATDGLSHPAVRVVIEGLASRGLIRPADLAMSMRSLGLERGATWSFPDLGDKIGEGSFLRGSPMGTPLSFVVLSWVNAWATSTFSRALTHGDDAVGRYTPGSLELDLYASRVASVGAALNREKTFKADHAWTACEIFALPRSHGEDKMTLFYPPSIPPSTLRAPVEADQRLENLWLRRMERVMKSRFPWIVKDPRLHLPVQVGGLGYTGRGLAVGVSVRRRLGALVSRGPSAVIAADLIGKKPFREVGLYPRPLCRVVRPGSYWKAVRATEQWFQAGGDTHVPLESLLSFKSCLIEDEVRLLEGDKFKRKRVAGRPDRTRAGAVFRRLGVAPCRPLTRRWGCSALIRWASLSRESEVTVPEDIASEIRERIPDPT
Ga0247523_101434	Ga0247523_1014341	F030619	MSPLQQVWTTCWSGLVLSGWDSLRVAWFLHSWVAKTVPSRGVAFTVKELKSLCHNVRGSALHSKRWKNVPCNIRKDVVDTLCRLAVRRPEDGFAFTRLSRSLPEPPLRECVKHLQAAKLIASTEFPTSTATLDSLRSFVALTPGVSGSGVLRHPRRLPSSSSSCLEWPATRGGIDGYLEHLGHMCEEAGATQSSFHAYAGDSLGAFCLRKASVVLRPCAGVAADLRESYRCAGLLYLRSQGKPFGMKATALRTPGYKVRVVGVPDCLTFVEGSWVRSSLRWLAPGHWRIDGESREIPGGLHYRAGRRFASLDLSKATDGLSHAAIRVVIEGLAARGLIRPADLTMSLRSLGLERGATWSFPDLGDKAGEGSFLRGSPMGTPLSFVVLSWVNAWATKAFSRAITHGDDAVGRYRPGSGELSLYASRVSSVGASLNREKTFTADHSWTACEILALPRKYNEDRMSLFFPPSIPPPALRAPVEADQRLENLWLRRMERIMKSRFPWIVKDPRLHLPVQVGGLGYTGRGLAVGVSVRCRLGALVSRGPSAVIAADLIGKKPFREVGLYPRPLCRVVRPGSYWKAVQATEQWFQAGGDTHVPLESLLSFKSCLIEDEIRLLEGDKFKRKRVAGRPDRTRKGAVFRRLGVALCHPLSRRWGCSALIRWALLSRESKVTVPEDIASEIRERIPDP
Ga0247523_107346	Ga0247523_1073462	F007311	MVTDFSTAAPSCWPPHFAVAPVTDYSMLDALRSPLRSDCSALRFLRPVPASDLTRRPTLSTPRLVQIAPHSTLCARAVHGSPRATDCSVVQHLELCPACGSLRPRWLTFHDALGLLLAHRFPPYGVPGLLRDRRVTLHAGLRIAPYSDALRPWPVHGFLRARS
Ga0247523_109236	Ga0247523_1092361	F030305	MPLQFIGSCIVPFGFLVPVPSFLFPALSDLARRCGSGRPVPRVSDRTGDEASSCPDSSVFSAVPADGSSSRPDSRILQLGYPQIARLPRLSTSCLAVDERPGCPDRSIIWLYRRRRFRVAPNLTSFGGTVSNSPSRPGSSLLQPLPLMVLRVAPGAPSSGFAGGDSSGCPEALIPRLCRLVALRVSPNLPPSDICRFRSSGLPQIGFLGGSMMNPRFARTLHPRSIQLTSLQVAPKLPLPAAPRMNLQTHSGLAFLPTLRCSLNLYPLFACRRTGLLRTTINQFPIACRAGLQSVS
Ga0247523_110444	Ga0247523_1104441	F089618	RLNLDGLVVQPVLRPSATPAANLQLSLPLLPLAAPVSNLRLASAALPPARPRANPPARIGVFSPGSTGGKHPARTVCYALPIDWLLTFQLALASGLQLGLRLLPTHIWCRPSARQVLRLPVLTGFRRNHRLAPVAAAAPTRAGCCPLLPHRPRTSDSHRLLFRRLCRSRLTQLALCAPTSGWAFDAPLASTEPCIAS
Ga0247523_110614	Ga0247523_1106142	F018933	CWSQPSLLRRSRITPRSTLDSLYRPRIAPRSVLIDRCCPPIARRSTLNARRRSQIAPRSTLCARAGHGLLHVQHLESSPRVQIAPYSTLCAPRRSQIAPRSTLPARYRSRIAPLSAIDAPCRSTDISVRLHFAPCAVHGLLRAQHFKLRTAHRLLCVRRLHFVQITDCSAFLTPCLVLLADCSVLNT
Ga0247523_110846	Ga0247523_1108461	F010305	LKRAEKPHSKFSGRKVLDGPATRPKTPLAVENGVGKLTAPEKGAPNVSMGKRDWRTPI
Ga0247523_111507	Ga0247523_1115071	F080063	VALGQRTVKSGGRPRAKGGDAEPQSQTCLHLVRKPASANASPSELRGLTRRFSRRKALDGPAMRPQFRLPWRMASGSWQPRKGAPNVSVGKREWRT
Ga0247523_111728	Ga0247523_1117281	F009688	GSSPSSLSQTGIGRPLGAAGFPTPFSTASGVFGLVAGPSNAFRPWILSEAFQLAWAGGCATGPPTRSRHACNSVRVLTTCPGTATAFDGAFARSHGSRLFTRKLPCFCSPAVSFLISPAPGSVSRSLPSRRELPDPRAPFVRLSTFLFLADSTF
Ga0247523_111925	Ga0247523_1119251	F036126	VNPASPKLSFRLMRSRGNQPDPTFPQSPGIIHETRSFGFTLDHRF
Ga0247523_112141	Ga0247523_1121411	F018876	VPPAGLSFGLPTSFGSFVPALDSWAKSPLSIKGRLSSRTGEVTLSFGSAFLSSTEAVDPFASLPLPVTSPAELRLASSLPRISFFGLAGDRSPFPLNAVAPAQSATKLLLLPNFASPALPGMGLPISLESCIPQLAPRGESPTSFGPSSS
Ga0247523_112816	Ga0247523_1128161	F036577	MLGKPLMLSPFSIRRFGAARVDTIPLLDRTSHRPAVRRMSLPMSLESSLPQLAPQAIFRS
Ga0247523_115160	Ga0247523_1151601	F010404	MQPFTLLQRRFALQQIPAAGSTLLAYTFKAALEFQLARSASRSRPRLAFFRLTGLDHCESPVANFLS
Ga0247523_115500	Ga0247523_1155001	F044777	VPSDPIPSLALHRHARYRAPHREALSVSPFRSPGFDFSPPGSVLSGPPQSFFSTEPVSRNGLSLARNGCSLSEASISGSTVPTCYFKTSQLKSAPGPLSAPLPTTGLPQLRAASSLQPVALLLAGSLDCFLCLHSPPGLLPPSGSKRSTDSAALRLTFRTRPISSRSPPPFYY
Ga0247523_116596	Ga0247523_1165961	F068474	AAVFDSAFARRHGSRLFTLKLLFFHSPAVSFLTSPTPGSFSRGLPSLRGLPGPDSRFVPPFGVFLLAGSTFYF
Ga0247523_117085	Ga0247523_1170851	F091140	VALSLSKPLTARSDGGCYPPSRPEESGLSSVAHPSTKAAGPVSRRKSSSQGATAIIAP
Ga0247523_117605	Ga0247523_1176052	F058155	QCHGSRLFTLRLPFHHSPAVSFLTSPTLGSFSRGLPSLRDLPGADALFVPAFAVFLSAVSIFYF
Ga0247523_117624	Ga0247523_1176241	F037019	SPHGPISPAFAGENSGIEPILQATCSWAWARLGSLSVNQQGAAFPHRRYDRDSFRRDRTPNRVAWRFPDWTAVGFAFPSPFLGSAPLGIPLPEHSRLVGLDLTIDGRLSLHGGQITGGDTNPDCQIRRFCAASSGGLVAGRRLSPCPHLFASHGLSLSESRSKLSGAFSDFA
Ga0247523_117947	Ga0247523_1179471	F025423	VPSDPISSLAHHGHASVLSTAFRNAVRLACLLHGNRFSGHRFNAFRRAAAYLSETGPLARNGLSLARNGSRFHGLHSGVNGPGLPLRYLACRFLRPFGLSAPLPELVCPNSRRFLASDPLHFRRQTHPTALPISTPLREFWLPRDQSVQWASLPSGPPSEFARFPLAPRS
Ga0247523_117998	Ga0247523_1179981	F102319	MIPVPITSWSKSLLRYKNKSMVMDVAAANKMNLMKEEKDGPCKAMLRSILVSVLHV
Ga0247523_118096	Ga0247523_1180961	F022827	TSPPAFRPAARCPEGYSLVPRRALRLHPGIEVSLAFSLDPAPHGFRFGIRAIPAVPTRVVSFELRVLPRRLESACASYPAYSPCGSIRLALRHFLLDLPRARRSLSTLAGFQLRSRGPAVFPPSSLPAHFYMCRSSAGSSRFLPNSCPAASIRLFGTHCLRRELLPAF
Ga0247523_118178	Ga0247523_1181781	F003383	MIFSSMDQCIVSFCLSMRLQVAPLPQSSRSARVASPGCPFPAPFLLSRRPNPRVAPRFRAFGCAGDGSLELPRASMPLALPVSASFPSCPGAPAFSCRACDEGLGSPLVLHLRLYRRSVIELPRCSHHSAVPTYRSSGCPKFQPFGIADDSLSESPRTSNPPAPIDGY
Ga0247523_118220	Ga0247523_1182201	F009688	GAGVPSPPRRVALRGSSRTVFREGEDSCGPGEFAMLSFPDRHLAHPFGAAGFPTPFSTASGVFGLVAGPSNALRPWILSEAFQLASAGGCATGLPTRSRHACDFFVRVLTTGPGSATAFGGAFARNHGSRLFTLKLPLFHSPAVSFLISPALGSFSRGLPSRRLLPDT
Ga0247523_118342	Ga0247523_1183421	F024793	VNFASPELSLRFQRSRINQPDPAFPRSPGIILKLDNLNLTLNR
Ga0247523_118370	Ga0247523_1183702	F004183	NLSMERLRGANEDRAIPEGEPNGCEACWRVDPEGAKTPKGERWQAAQLAEQAGRECNGLEAWMQPDAGANQQLAAEPKSRTSRKTGKQVSEVAGQDL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300023684: Metatranscriptome of spruce roots microbial communities from Bohemian Forest, Czech Republic - CRE2 (Metagenome Metatranscriptome)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences