Sample 3300023682

Basic Information
IMG/M Taxon OID	3300023682 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0128948 \| Gp0290731 \| Ga0247513
Sample Name	Metatranscriptome of spruce roots microbial communities from Bohemian Forest, Czech Republic - CRI2 (Metagenome Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Sample Name

Metatranscriptome of spruce roots microbial communities from Bohemian Forest, Czech Republic - CRI2 (Metagenome Metatranscriptome)

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	26588730
Sequencing Scaffolds	16
Novel Protein Genes	16
Associated Families	14

Dataset Contents

Total Genome Size

26588730

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Amabiliviricetes → Wolframvirales → Narnaviridae → Narnavirus	1
All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Amabiliviricetes → Wolframvirales → Narnaviridae → Narnavirus → unclassified Narnavirus → Plasmopara viticola lesion associated narnavirus 22	1
Not Available	14

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Amabiliviricetes → Wolframvirales → Narnaviridae → Narnavirus

All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Amabiliviricetes → Wolframvirales → Narnaviridae → Narnavirus → unclassified Narnavirus → Plasmopara viticola lesion associated narnavirus 22

Not Available

Ecosystem Assignment (GOLD)
Name	Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Ecosystem Assignment (GOLD)

Name

Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Type

Environmental

Taxonomy

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

Unclassified

Earth Microbiome Project Ontology (EMPO)

Free-living → Non-saline → Soil (non-saline)

Location Information
Location	Czech Republic: South Bohemian Region
Coordinates	Lat. (^o)	49.044	Long. (^o)	13.617	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

Czech Republic: South Bohemian Region

Coordinates

Lat. (^o)

49.044

Long. (^o)

13.617

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F003050	Metagenome / Metatranscriptome	510	Y
F004452	Metagenome / Metatranscriptome	437	Y
F009017	Metagenome / Metatranscriptome	324	Y
F009688	Metagenome / Metatranscriptome	314	Y
F012750	Metagenome / Metatranscriptome	277	Y
F018933	Metagenome / Metatranscriptome	232	N
F026569	Metagenome / Metatranscriptome	197	Y
F030305	Metagenome / Metatranscriptome	185	N
F030619	Metagenome / Metatranscriptome	184	Y
F031875	Metagenome / Metatranscriptome	181	N
F040634	Metagenome / Metatranscriptome	161	N
F058585	Metagenome / Metatranscriptome	134	N
F059015	Metagenome / Metatranscriptome	134	Y
F059538	Metagenome / Metatranscriptome	133	N

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0247513_101532	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Amabiliviricetes → Wolframvirales → Narnaviridae → Narnavirus	2162	Open in IMG/M
Ga0247513_101561	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Amabiliviricetes → Wolframvirales → Narnaviridae → Narnavirus → unclassified Narnavirus → Plasmopara viticola lesion associated narnavirus 22	2147	Open in IMG/M
Ga0247513_109366	Not Available	885	Open in IMG/M
Ga0247513_110460	Not Available	812	Open in IMG/M
Ga0247513_110726	Not Available	796	Open in IMG/M
Ga0247513_111094	Not Available	775	Open in IMG/M
Ga0247513_112498	Not Available	698	Open in IMG/M
Ga0247513_112847	Not Available	681	Open in IMG/M
Ga0247513_113021	Not Available	673	Open in IMG/M
Ga0247513_115459	Not Available	582	Open in IMG/M
Ga0247513_115574	Not Available	578	Open in IMG/M
Ga0247513_115599	Not Available	577	Open in IMG/M
Ga0247513_115606	Not Available	577	Open in IMG/M
Ga0247513_115663	Not Available	575	Open in IMG/M
Ga0247513_116041	Not Available	564	Open in IMG/M
Ga0247513_118022	Not Available	510	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0247513_101532	Ga0247513_1015321	F030619	MSPLRQVWTTCWSGLVLSGWDNRRVAWHLHSWVTATMPSRGLAFVVQELKMLCHNVRGHALHSKRFTNSPCRIRKDVVEALIYLAVREPENAFAFTRLARALPEPSVRATVSALQSAKVMATSDYPTSVASLESLRSFVALAPGASGNGKVRAPRRLPSSLSSCLEWPATRGGIDGYLEHLGQGCEARGETQVKYHPWSGDSLGAFCSQKARVVLRPCQGVSEDLRESYRCAGVLYLRSQGKPFGMKAHALRQSGYKVRVIGVPDCLTFVEGSWVRSSLRWLAPNHWRIEDGSLEVPNGLQHKHGERFASLDLSRATDGLSHACVKVVVEALVSRGLIRPADEVMALRSLGLRDGATWSFTDLGDKIGEGPFRRGSPMGTPLSFVVLSWVNAWATSAFTKSLTHGDDAVGRYRVEASSRRGGSALDLYADRVESVGASLNTRKTFKADHSWTACEILARPGEWNKDGMALYFPPSVPPPVLRAPVGADPRLDNLGLRRMERVVRARFPWIVKDPRLHLPVQVGGLGYTGRGLSVSRKLRARLGALVSRGPSAVIATDLIGTKPFREAGLYPQPLVRVVKPASYWKAQRAISVWFQPGGSATVPLEALLSFKSCLIEDEIRLSEGERFKRKRVAVRPDRARRSAVFRRMGVKPAKPLSRSGGVPALIRWAKLSRESLVTVDQD
Ga0247513_101561	Ga0247513_1015611	F030619	LERNTYKRLTSLVKSLPTEQSDTPSRKGVRAHRHRGGDMSPLQQVWTACWSGLVLSGWDSMRVAWFLHQWACRSAPRGVAYQVDCVKKLCHNVRGASLHSKRWKIQPCGIREDVVDCLCRLAVRSPENGFAFSRLSRSLPEPPAREAIQHLRSAAELASAPFPTSAAALESLRSFVSLSKRARRNPRAPRRLPSSSSSCLEWPATRGGIDGYLEHLGHGLEERGASQAEFTRFAGDSLGAFCLSRARVVLRPCSGVSEDMRESYRCAGLLALRAEGKPFAMKAAALRAPGYKVRVVGVPDARTFVEGSWIRESSRLLPPGHWTIDSESREIPNGLHYRRGHTFRSLDLSKATDGLSHAAIEVVVEALVRRGAIRPADHLAARRSLGLVGNTTWSFPDPIGEVVFSRGSPMGTPLSFVVLSWVSAWAAGKFSRSLTHGDDAVGRHRIGSDALDVYANRVASVGAQLNKGKTFRADHSWTACEILALPRENCEDRMTLFVPPSIPPPGLRAPTEADPRLENLWLRRMERVIKSRFPWVKCDPRLHLPVEVGGLGYTGRGLAIGRSLRSRLGALVSRGPDAVIGAALIGKKPFREVGLYPHPLVRIPKPRAYWKAAKAVDRELAPLGADLVSVPLESFEIFKCQLVESELRLSEGEKFRRKRVAGRPDRNKRSAVFRRLSVKPAKPLSRFGGLASLKRWALACKSVRVTVDQDIASEI
Ga0247513_109366	Ga0247513_1093661	F030305	LQFIGSCIVPFGFLVPVPSFLFPALSDLARRCSSGRPVPRVSDRTGDEAPSCPGSSVFSAVPADGSSSRPDSRILQLGSPQIARLPRLSTSCLAVDERPGCPDRSIIWLYRRRRFRVAPNLTSFGGTVSNSPSRPGSSLLQPLPLMVLRVAPGAPSSGFAGGDSSGCPEALIPRLCRLVALRVSPNLPPSDICRFRSSGLPQIGFLGGSMMNPRFARTLHPRSIQLTSLQVAPKLPLPAAPRMNLQTHSGFAFLPTLRCSLNLYPLFACRRTGLLRTTINQFPIACRAGLQSVS
Ga0247513_110460	Ga0247513_1104602	F018933	SRVAGLSLCCLRRSRITPRSTLDSLYRPRIAPRSVLIDRCCPPIARRSTLNARRRSQIAPRSTLCARAGHGLLHVQHLESSPRVQIAPYSTLCAPRRSQIAPRSTLPARYRSRIAPLSAIDAPCRSTDISVRLHFAPCAVHGLLRAQHFKLRTAHRLLCVRRLHFVPIVDCSAFLTPCLVSLADCSVLNT
Ga0247513_110726	Ga0247513_1107261	F058585	LDHSQYSRCCVLRLPQWPPSSFRWRCYHWLRWLSELRLASGPCTPARPVANLPARIGFVSFGSTGCKPPTCVDCSALPLVLRRSIWLAPDDPGLIGLAPDNPGSTRLAPHGPFLRLGRQPTSDSHRCRPLARLAASSGLRLMLPLPLGWLRFQFALAASPSALTVREPLGLRLVAPSPAEPVMHSLFQLNLASPAKPSMSILYPLALASSGIFQLNNFRLASAFALLVRPAIPLRLAPQVSPSVRVYGHRSGSHRLFAP
Ga0247513_111094	Ga0247513_1110941	F009688	MLSFPDRHLAHPFGAAGFPTPFSTASGVFGLVAGPSNALRPWILSEAFQLASAGGCATGLPTKSRHACDFFVRVLTTGPGSATAFGGAFARNHGSRLFTLKLPLFHSPAVSFLISPALGSFSRGLPSRRLLPDTGTLFVCLSAFLIWRIQLFIFEPPESPTPC
Ga0247513_112498	Ga0247513_1124981	F059538	VNSVVQPLLRPSATPVARLQLSLPLLPLAAPVSNLRLASAALLPARPRANPPARIGVVSPGSVGGKCSAFAVYYALPIDWLLTFQLALASCLQLGLRLLPTHIWRCPSARQVSQFPVLTGYCCNN
Ga0247513_112847	Ga0247513_1128471	F031875	VLMRSSNLSPFGDCDSSVLETCPDYLTQLAAVSNRDSLRDPSFAFDGVRTPPEESVNSASPNLRPVQRSRGNQPAPAFPRSPGIILKRSFLILLSTTVS
Ga0247513_113021	Ga0247513_1130211	F018933	RSTLNARRRSQIAPRSTLCARAGHGLLRVQHLESSPRVQIAPYSTLCVPRRSQIAPRSTLPAPYRLRIAPLSAIDAPCRSTDISVRLHFAPCAVHGLLRAQHFKLRTAHRLLCVRRLHFVQITDCSAFLTPCLVLLADCSVLNT
Ga0247513_115459	Ga0247513_1154591	F003050	MESVKAGAVAGEGKAVTSERFSFGKISCGASESVEAVAAKPAAGEQTDNAHGAPERDAQYGCMPVVSKAGNRVT
Ga0247513_115574	Ga0247513_1155741	F026569	MHGTEHRVPERRALRLSAPRKPVYPASASSLPSAPQPLILSKTGPFARNGLSLTREGLRLREFRPGVEGPGLPLRSLACRSSCPFGFSAPPPVAGSPQRPAASTPQARCIPYRPALPAVLPACAPLWEFSLPWDQRTGKLRNRSVRLPELPDLVRSPQPFHLKIRLRINVPDPLRFQRL
Ga0247513_115599	Ga0247513_1155991	F059015	RVHGTIQRPVCMRTFALQPDVRDKTTHRSPSPLFSMRQVIALSHLHHTSLSDRHPTGAGSSIRPFARSQRRFRHHCEVNVPGLHLRFHIGNLRESVRLQALSLRSVSRPNRGAVNAQNPLSAPTSNAPDFSPISTPLQVLSRKPSGSKRSTGSISGNPSYQTFDCPLLPATSSFDSATDQRLKLASFGLTY
Ga0247513_115606	Ga0247513_1156061	F012750	LQARERPLRKTGSIEETDCGGPEGVDPEGEKSNLGERNGETPGATQCGALYRACRWRARLGIG
Ga0247513_115663	Ga0247513_1156631	F009017	SDPISSLAHHGHATVLSIAFRIAVRFACLLPGNRFSGYRFNAFRRAAAFYPKLDRSLVTAFSSPATASAFTDSIPRSMVLACYFAVSPAGFRARSVFPLHRRNWFAPIPAASTLQTRCTSTRKLIRPLSPSPLPFGSFTSLWIKAFNGRCCRPVRLPNPPDFRSLPATVLFLEEGHGSSFAIRYVFGGLLF
Ga0247513_116041	Ga0247513_1160411	F004452	VGRKVSILRERNRTQGNGTAKHSALLDAMLSAVHAGGEQGWESG
Ga0247513_118022	Ga0247513_1180221	F040634	MHGTEHRISDRRAYSPQAPRLLAYPASASSLLDTPQLIFPKQDRSLVAAFPSPKMPSACADSTLRSMVLACNFAHWLAVRPARSAFWLPRQRLVGPSSRRHPRLKPVAFCTGPLCQLCRQVPLPFRSFRSLRINALPGFATVRSAFRNCPIFVRSPQ

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300023682: Metatranscriptome of spruce roots microbial communities from Bohemian Forest, Czech Republic - CRI2 (Metagenome Metatranscriptome)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences