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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300023548 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0133538 | Gp0295815 | Ga0256727 |
| Sample Name | Hydrothermal Fe-rich mat microbial community from Loihi Seamount, Hawaii, USA - 677-SSYellow |
| Sequencing Status | Permanent Draft |
| Sequencing Center | University of Delaware |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 272241056 |
| Sequencing Scaffolds | 13 |
| Novel Protein Genes | 15 |
| Associated Families | 14 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria | 2 |
| Not Available | 7 |
| All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia → Candidatus Brocadiales | 1 |
| All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia → Candidatus Brocadiales → Candidatus Scalinduaceae → Candidatus Scalindua | 1 |
| All Organisms → cellular organisms → Archaea → DPANN group → Nanoarchaeota → unclassified Nanoarchaeota → Nanoarchaeota archaeon | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Hydrothermal Fe-Rich Mat Reference Genomes |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Marine → Hydrothermal Vents → Microbial Mats → Hydrothermal Fe-Rich Mat → Hydrothermal Fe-Rich Mat Reference Genomes |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | marine hydrothermal vent biome → marine hydrothermal vent → microbial mat material |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Surface (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: Loihi Seamount, Hawaii | |||||||
| Coordinates | Lat. (o) | 18.905558 | Long. (o) | -155.256977 | Alt. (m) | N/A | Depth (m) | 1271.23 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F004651 | Metagenome / Metatranscriptome | 429 | Y |
| F007072 | Metagenome | 358 | Y |
| F010945 | Metagenome / Metatranscriptome | 297 | Y |
| F018816 | Metagenome | 233 | N |
| F024208 | Metagenome | 207 | Y |
| F029285 | Metagenome / Metatranscriptome | 189 | Y |
| F049761 | Metagenome | 146 | Y |
| F059103 | Metagenome / Metatranscriptome | 134 | Y |
| F061392 | Metagenome / Metatranscriptome | 132 | N |
| F066904 | Metagenome / Metatranscriptome | 126 | Y |
| F074743 | Metagenome / Metatranscriptome | 119 | Y |
| F078263 | Metagenome / Metatranscriptome | 116 | N |
| F088125 | Metagenome | 109 | Y |
| F094884 | Metagenome / Metatranscriptome | 105 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0256727_1006406 | All Organisms → cellular organisms → Bacteria | 4637 | Open in IMG/M |
| Ga0256727_1014405 | Not Available | 2667 | Open in IMG/M |
| Ga0256727_1020686 | All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia → Candidatus Brocadiales | 2091 | Open in IMG/M |
| Ga0256727_1039541 | All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia → Candidatus Brocadiales → Candidatus Scalinduaceae → Candidatus Scalindua | 1403 | Open in IMG/M |
| Ga0256727_1087485 | Not Available | 900 | Open in IMG/M |
| Ga0256727_1101227 | Not Available | 832 | Open in IMG/M |
| Ga0256727_1102788 | Not Available | 825 | Open in IMG/M |
| Ga0256727_1103575 | All Organisms → cellular organisms → Archaea → DPANN group → Nanoarchaeota → unclassified Nanoarchaeota → Nanoarchaeota archaeon | 821 | Open in IMG/M |
| Ga0256727_1130311 | Not Available | 726 | Open in IMG/M |
| Ga0256727_1134149 | Not Available | 715 | Open in IMG/M |
| Ga0256727_1140946 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium | 696 | Open in IMG/M |
| Ga0256727_1171042 | All Organisms → cellular organisms → Bacteria | 627 | Open in IMG/M |
| Ga0256727_1175237 | Not Available | 585 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0256727_1006406 | Ga0256727_10064066 | F059103 | MISREFKSLVVQLESLDAATAAWLVDFCGHLQHAIWQAYGDEIEAYWTATEPEQPVTGPLSPITPRKRR |
| Ga0256727_1014405 | Ga0256727_10144052 | F007072 | MKSILNKKGQLTLGDAPTVVLLVGLVFLVMATIALVGDKYGDALKVSNTGAGCNATDTSNCGVAYNVTQDLNTEIANNTSIAGIVLTISLVGIVLTVLMGVFLAIRTRRI |
| Ga0256727_1014405 | Ga0256727_10144053 | F007072 | VKKINMSKKGQLTLGDAPTVVLLVGLVFLVMATIAFIGEKYGAALTSGSVAQNVTTALNTEISNNTSIAGIVLTISLVGIVLTVLMGVFLAVRTRNI |
| Ga0256727_1020686 | Ga0256727_10206862 | F061392 | MIVKRLSIFCAVFIVGLFITLQTIASGLDEPDPTFKLAATLFPIDGGQLFIGNVDRDKKTFRLHLRHIGKNSKWIYYYASASTFVNEDGEVEPDNAVASIEYPQYTASIVGNTFRKARVRILFIPRGEGKGFFKEAGHVIFQKCATKAFEAKDWKCTGWEYLGKLPGFP |
| Ga0256727_1039541 | Ga0256727_10395411 | F078263 | MELLHDSSGLVGSLDCQLKRLEEKIDTSRPVALMKDLHRLDDEIRHFKDVEITTNTVVSSVKEQNETIQRLEEKTRNKYTEMASQIRETEVIVADKHKDVVSKINDISSRIDNLEKKIDSAVRELKSEARKTSFLRKLLWLD |
| Ga0256727_1087485 | Ga0256727_10874851 | F029285 | MKDSADYNLYKCPYEHLKKECGHELHGPEGYENTYGVWCSCGFRAPVFYL |
| Ga0256727_1101227 | Ga0256727_11012272 | F010945 | VTRTDCPCGKADLSSAQMTMHRRSKAHKDWAAENGEIEDVASAGDSDFEGILEAARQGEDVRHVAKMARSIFRARGWPNEEHPETVRDWLESHNIPIIDVPIHSDPDEQRKHVAAEMERIRLAGWGKGWSIT |
| Ga0256727_1102788 | Ga0256727_11027882 | F066904 | MRVRSRINRVAVHDVPKQEVLVHIQRLGHRVELAQPQARFDFVIGGRARLALRVAYPSASRRRVNMGKRTYEYVYRAWNFNFHHRGEVGECYCDLFICVPLLREQRTNLAETFLLPWDAIGGKTFYLPDSRRPYAGKFAVYRNAWHLLRDAAARASDI |
| Ga0256727_1103575 | Ga0256727_11035753 | F094884 | MTKNKLIGSTYVNIIKDEKGEIKFAYGYEVDDNEVSLNDLAMLNSFLDKIKDMAKQDFQERLDKNDKEFSIESDGTQ |
| Ga0256727_1130311 | Ga0256727_11303111 | F049761 | MTTAIESQYHFTAEVKSKGKQQNRDGWAMVVDWKLPGSKYDLTLYGQDWETVQGFEVGETAIITINQGNLKKDKTGQYSTD |
| Ga0256727_1130311 | Ga0256727_11303112 | F004651 | MTTSETIENHYGAAHAHLSDDELLAEMEHIGAILDGFKNTLGHLEQEAYRRMEEKKATSIPSETYICEMETGFKYDQMSFGPLKEVFNEADLKKCLTPAHTEETKVADKWTTATVKSLAVKYGAEALRILENARTESRGRLKFARRETR |
| Ga0256727_1134149 | Ga0256727_11341491 | F024208 | MERLTIARTRRWGNSSIQINNVYSALRSKVRMDDVIRMANDMIAKEQPITNEEIENEVLCSRDNGTTEFIHRVEKKGKRSI |
| Ga0256727_1140946 | Ga0256727_11409461 | F074743 | MIDLQDKDKRGRLLKAIKTSREAMQPFRRVRTELVRDYVGSWYSETGARNKTLTNLMNQTARIYTIALAANNPQVLVSTPREVNLPFARRFEINLNTLISDMNLDQTFRQIVLDAFFCIGCGVVMMRDTDTRFHGLIEAEEDVWLDPGEPWLNRVALDDLILDMSARELTKMRFCGHRYRADFEKVMDEPGYSKKAKAKLTATSRTAKET |
| Ga0256727_1171042 | Ga0256727_11710421 | F018816 | MLNNFAATQGGGKDTVTTTTILDGTIANADVASDAAIDTSKINYGNTLEIEGSSGDLALEIDNNVT |
| Ga0256727_1175237 | Ga0256727_11752371 | F088125 | ARHCTCAARRRKMMYLLDAGRVTLFSIFLVATVRFFYLAWQTRNAHSDDVVVQQHFMEHAVAASLAFIGSLLGTLYSIVHLFSAEQGVLSETPFTISMLFLLISGIAFMLHMIKEQTPHHLFYIRENGEDD |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |