3300023535: Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 61R (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300023535
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0132854 | Gp0267192 | Ga0232115
• Sample Name: Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 61R (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 5441984
• Sequencing Scaffolds: 5
• Novel Protein Genes: 8
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium	2
All Organisms → cellular organisms → Eukaryota	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Seawater Microbial Communities From Monterey Bay, California, United States
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → coastal water body → coastal sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: USA: California
• Coordinates
  • Lat. (^o): 36.8313
  • Long. (^o): -121.9047
  • Alt. (m): N/A
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000021	Metagenome / Metatranscriptome	6082	Y
F000075	Metagenome / Metatranscriptome	2622	Y
F002832	Metagenome / Metatranscriptome	527	Y
F006507	Metagenome / Metatranscriptome	371	Y
F026579	Metagenome / Metatranscriptome	197	N
F041805	Metagenome / Metatranscriptome	159	Y
F067105	Metagenome / Metatranscriptome	126	Y
F073592	Metatranscriptome	120	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0232115_101813	Not Available	646
Ga0232115_102224	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium	596
Ga0232115_102516	All Organisms → cellular organisms → Eukaryota	568
Ga0232115_102784	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium	544
Ga0232115_102901	Not Available	534

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0232115_101813	Ga0232115_1018131	F026579	VSQPSFSKTVSEVKIIFADEKEGEGSPTDEEPDCE
Ga0232115_102224	Ga0232115_1022241	F006507	MKFTAFVALIASASAIQNKDYFFARDIGRGTLDKKYERVPPARFSADSDDLFMRSVIMKYAAEEKTEDGAPSGNFFLNEASTRALASEVLGTHKGLSGDALAAYMNTYFKKAWGHFDVNQTGFVEVIKMPQLMRFLCSDQYMQLGESG
Ga0232115_102472	Ga0232115_1024721	F000021	GGTGIKQLRENIAESKLSYEIMDDAAQAFLKMKIMDNIHKYYYLIVFTAYMREAADLAREAVAEEKKGELTLSGGRCAIPGDQLKLSKKFVQFVEENPKLRDLVETGKGNLQWERDIPPAALSNLESLAANDFKANLGKIIHDIYQTAHLMFSDMPQGDHKKRAKYRFASKTLMRILPQPLSKEIEAKIEQ
Ga0232115_102516	Ga0232115_1025161	F073592	VSLLPLETLLTRNYTTGGVFNKESKQHSADPHSFGGFFSCFGVSVGKSNVQFSGSLDNSESFAGSNVLGNFTAENSVVHEEDLDISLVGDKEFLESVREDVSGLSILFVTNEHLLWLSTSESSSGRAINTSDGSVTVWVDSLVLVSLESTWDFGNLLNNFSSVQWC
Ga0232115_102784	Ga0232115_1027841	F041805	FKSLAAIMLVGTSAATALMSQEQRHERALRSIHDAMSLIQVGSQEHTYLHNALVTMTMKTDAEILESHSQIVNVPIDEKRAISFKVSPTYTLDEVNSVTLKSFRKVVGYDTFDSIRQHNRNETKDPSSYYNVTISLMAKRKVDPAALTPAEVPSGAHSLAAKLDKGFPYDD
Ga0232115_102889	Ga0232115_1028891	F000075	MKFAAALIAVVSANQFESMNEDDLLVSLESNLNSALSSEARGDADAAVAKTAAIKNIQKALTARILKRLDDGQPLVEVARKMKAIEGMQPQINDMERRLGIMQSVEPVLENAIKTLQKVVDVRGMGKK
Ga0232115_102901	Ga0232115_1029011	F002832	LITFASATTIEQKGAISYTYEDIREQELKCKADRNREWKYDAATNTWACPLQRYD
Ga0232115_103020	Ga0232115_1030201	F067105	LMKLQNAWKEREDNEKLQTKSKAEALSKALVDSWSASLPADMMTDENKKAIFALAQNFPQESVKMMEIAHKASKKYKSDMDSFAAQQQAKEKRHLESRVMDIVTKKRRIVPDTTSVVHAASVKKARVANPFSFDASKTSSSMNSVRDRNPQLFSALSGFSTGNLRDRMGQIAKIN