3300023492: Human gut microbial communities from healthy child feces in Northridge, California, USA - CDI_158B

Overview

Basic Information

• IMG/M Taxon OID: 3300023492
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133482 | Gp0296389 | Ga0257037
• Sample Name: Human gut microbial communities from healthy child feces in Northridge, California, USA - CDI_158B
• Sequencing Status: Permanent Draft
• Sequencing Center: University of California, Irvine
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 104928652
• Sequencing Scaffolds: 12
• Novel Protein Genes: 13
• Associated Families: 12

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia intestinalis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → Subdoligranulum variabile	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Child Gut Microbiome
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Gut → Child Gut Microbiome

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: USA: Northridge, California
• Coordinates
  • Lat. (^o): 34.2381
  • Long. (^o): -118.5301
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042936	Metagenome	157	N
F044554	Metagenome	154	N
F047126	Metagenome	150	N
F062845	Metagenome	130	N
F067844	Metagenome	125	N
F076189	Metagenome	118	N
F087336	Metagenome	110	N
F088921	Metagenome	109	N
F090513	Metagenome	108	N
F092227	Metagenome	107	N
F101355	Metagenome	102	N
F101356	Metagenome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0257037_100118	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia intestinalis	96176
Ga0257037_100623	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	30455
Ga0257037_100761	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	26259
Ga0257037_100995	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	21404
Ga0257037_101115	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	19253
Ga0257037_101490	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → Subdoligranulum variabile	14696
Ga0257037_101689	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	13053
Ga0257037_102062	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	10637
Ga0257037_102272	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	9596
Ga0257037_103166	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → Subdoligranulum variabile	6709
Ga0257037_103934	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	5314
Ga0257037_104372	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	4777

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0257037_100108	Ga0257037_10010857	F101356	LDEKLQTDVGELIPVVTPEKDGLSNSKFATTKIKSEGKRSVLLYRSSSSQWAPFAIRVSCISTGEPLSDFYVYIAGNTMELQDSTKVYVKYLYGQPNSDTYLKMKYETDHRISIYLTSDKSLGDRTIVRELIVRDSMYDMATQDDEITGLADCTIVQ
Ga0257037_100118	Ga0257037_1001181	F067844	MNTLAAETASAWYLILNRKLQTLPIYITQLSSHLPRPLTMGTQQVSAGAA
Ga0257037_100623	Ga0257037_10062322	F044554	VLAGRFIPVLCASIARLFPCRTEIARCLTLDFAISRYLFLSFSFSFRTNFAQALFSSLLFASDTRAKSILFLLFENEIAHLQGQYRFNSHRYCFSAFLVL
Ga0257037_100761	Ga0257037_1007614	F062845	MEKTPFILHEKFRSDNNEQRKEHFQKKFERYIVDELSNTALSKSCA
Ga0257037_100995	Ga0257037_1009953	F101355	MIEPPFQHGIADMAFWFIQWYLPSAQPLQPKGAGAVFSYVLPRCSYFFKIFVTEMSIFICMHKCLAQTGRLRGSSCHIVVAAKRACACTLLWISDHFYKKLLPYVLFFFFKIYLKKIDFFQNIA
Ga0257037_101115	Ga0257037_10111514	F076189	VLSAGHCFFLFPFIKPLLYVEKLQIGTVLPVVSDLYREFAELSAHFDSHAIQSAQKQLRMLCNFHENTFGLLIFYANYAIL
Ga0257037_101490	Ga0257037_1014906	F042936	MGRGGGKGRVWKTKEGIMKTSGIVDRGEDTIRNFEKVEQEEALTPPYLGKVYFRSRLRGK
Ga0257037_101689	Ga0257037_1016897	F092227	MKEEKRKRILRVGCLILAGIFALSMLGSVIMMLLV
Ga0257037_102062	Ga0257037_10206210	F088921	LGATIRRYKIGAGKNHFLCSEKSKSTVFDLDRETKKRKYAKGTCRIYIEKDQNMQEEKKEKYINGEIYGEKNQIMVANKSAMIRDKMQSKS
Ga0257037_102272	Ga0257037_10227210	F087336	MHCLLRGMVAELEQVPKAFKAAGNQRRAAAKERIKDDAIGHGRVSDRILAEIEDNHMRERDTKIGLAEQRQVAFLGIAFQILPLKSKQKRAPQEVNSQSALSESNQLISP
Ga0257037_103166	Ga0257037_1031663	F047126	VYLKTKKMTNISQTQAGFKSKSLGILCGFQGFLAQNPAALVETDDIFDISDTPYGFSGLNTLRAAGVPNPPPPFAQRFIACFCSQTAVASQSKSAYILSFLESPCILCSLLRHFHILSKKLQKTC
Ga0257037_103934	Ga0257037_1039343	F090513	MTKYVRKMEWKLLHIKHILYMRPFGALKIAPQSVGNKNGTKAVLQGWAAAFVPYFTY
Ga0257037_104372	Ga0257037_1043722	F092227	MNEQKRKRVLRIGCLVLAGVFVLSLLGSIFMMLPL