Sample 3300023489

Overview

Basic Information
IMG/M Taxon OID	3300023489 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0133482 \| Gp0296382 \| Ga0257030
Sample Name	Human gut microbial communities from healthy child feces in Northridge, California, USA -- CDI_129B
Sequencing Status	Permanent Draft
Sequencing Center	University of California, Irvine
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	103091033
Sequencing Scaffolds	9
Novel Protein Genes	9
Associated Families	9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	4
Not Available	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Child Gut Microbiome
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Gut → Child Gut Microbiome

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal distal gut

Location Information
Location	USA: Northridge, California
Coordinates	Lat. (^o)	34.2381	Long. (^o)	-118.5301	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F032286	Metagenome / Metatranscriptome	180	Y
F042936	Metagenome	157	N
F047126	Metagenome	150	N
F055775	Metagenome	138	N
F062845	Metagenome	130	N
F068811	Metagenome	124	N
F076189	Metagenome	118	N
F087334	Metagenome	110	N
F092227	Metagenome	107	N

Family

Category

Number of Sequences

3D Structure?

F032286

Metagenome / Metatranscriptome

180

F042936

Metagenome

157

F047126

Metagenome

150

F055775

Metagenome

138

F062845

Metagenome

130

F068811

Metagenome

124

F076189

Metagenome

118

F087334

Metagenome

110

F092227

Metagenome

107

Scaffold	Taxonomy	Length	IMG/M Link
Ga0257030_100059	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	143229	Open in IMG/M
Ga0257030_100212	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	72097	Open in IMG/M
Ga0257030_100416	Not Available	45110	Open in IMG/M
Ga0257030_100669	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	31140	Open in IMG/M
Ga0257030_101216	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	16849	Open in IMG/M
Ga0257030_101349	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	15096	Open in IMG/M
Ga0257030_102749	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	7117	Open in IMG/M
Ga0257030_103490	Not Available	5526	Open in IMG/M
Ga0257030_108365	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	2329	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0257030_100059

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii

143229

Open in IMG/M

Ga0257030_100212

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii

72097

Open in IMG/M

Ga0257030_100416

Not Available

45110

Open in IMG/M

Ga0257030_100669

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

31140

Open in IMG/M

Ga0257030_101216

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii

16849

Open in IMG/M

Ga0257030_101349

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis

15096

Open in IMG/M

Ga0257030_102749

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii

7117

Open in IMG/M

Ga0257030_103490

Not Available

5526

Open in IMG/M

Ga0257030_108365

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae

2329

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0257030_100059	Ga0257030_100059159	F068811	MDQDGSEHNICPNRKGLCPGKEQHGASGWKKIFQHGKESLRNKDSISQYCNKKAAVSLILNENVSETLCIFSIDKTNCCRI
Ga0257030_100212	Ga0257030_10021217	F076189	VLSAGHCFFLSPFIKPLLYVEKLQIGTVLPVVSDLYREFAELSAHFDLRAIQSAQKQLRMLYNFHENTFGLLIFYANYAIL
Ga0257030_100416	Ga0257030_10041645	F055775	MAQIAQQDNLVIEVTTTAAALDGATKKKLIECIEGGTITDVILVTKEVEKKISHARVVSWLVNTTGDSPKYTIDIINANSGAVEAIALN
Ga0257030_100669	Ga0257030_10066929	F032286	MVKWVCQIVTPIRHRALVFNTRLFAGTAADDALVTGSTLSFCRLMCLCVKRRNIMLNDKRRSLLNSALFRADNRTEQKTISPFSLALILTFDFAALSERRSCPEDRSRRFVLLGALDAALRQRTYPVRTVMQFSRFRCDCKTILAKNIALSRISKRSENAL
Ga0257030_101216	Ga0257030_1012164	F092227	MNEQKRKRILRAGCLLLAGVFLLSVLGSVVLMLLV
Ga0257030_101349	Ga0257030_1013495	F087334	MASRYPFVGAAAHLFPKNAIKMLSFSTSGKGSILPYPFRSSPLLAITFLYHPKDFFLYRAVALFEYREKHQ
Ga0257030_102749	Ga0257030_1027499	F062845	WTEKGDSMKKTPFILHEKFRSDNNEQRKERFQKEFERYIIDGLLNAVPPRSCA
Ga0257030_103490	Ga0257030_1034907	F047126	VYLKTKKMTNISQTQAGFKSKSLGSLCGFQGFLTQNPAALVETDDIFDVSDTPYGFSGLNTLRAAGVPNPPPPFAQRFIACFCSQTAAASQSKSAYILSSLESPCILCSLLRYFHILSKKLQKTC
Ga0257030_108365	Ga0257030_1083653	F042936	VWKTKEGIMKTSGIVDRGEDTIRNFEKVEQEGALTPPYLGKVYFRSRLRGKG

Scaffold ID

Protein ID

Family

Sequence

Ga0257030_100059

Ga0257030_100059159

F068811

MDQDGSEHNICPNRKGLCPGKEQHGASGWKKIFQHGKESLRNKDSISQYCNKKAAVSLILNENVSETLCIFSIDKTNCCRI

Ga0257030_100212

Ga0257030_10021217

F076189

VLSAGHCFFLSPFIKPLLYVEKLQIGTVLPVVSDLYREFAELSAHFDLRAIQSAQKQLRMLYNFHENTFGLLIFYANYAIL

Ga0257030_100416

Ga0257030_10041645

F055775

MAQIAQQDNLVIEVTTTAAALDGATKKKLIECIEGGTITDVILVTKEVEKKISHARVVSWLVNTTGDSPKYTIDIINANSGAVEAIALN

Ga0257030_100669

Ga0257030_10066929

F032286

MVKWVCQIVTPIRHRALVFNTRLFAGTAADDALVTGSTLSFCRLMCLCVKRRNIMLNDKRRSLLNSALFRADNRTEQKTISPFSLALILTFDFAALSERRSCPEDRSRRFVLLGALDAALRQRTYPVRTVMQFSRFRCDCKTILAKNIALSRISKRSENAL

Ga0257030_101216

Ga0257030_1012164

F092227

MNEQKRKRILRAGCLLLAGVFLLSVLGSVVLMLLV

Ga0257030_101349

Ga0257030_1013495

F087334

MASRYPFVGAAAHLFPKNAIKMLSFSTSGKGSILPYPFRSSPLLAITFLYHPKDFFLYRAVALFEYREKHQ

Ga0257030_102749

Ga0257030_1027499

F062845

WTEKGDSMKKTPFILHEKFRSDNNEQRKERFQKEFERYIIDGLLNAVPPRSCA

Ga0257030_103490

Ga0257030_1034907

F047126

VYLKTKKMTNISQTQAGFKSKSLGSLCGFQGFLTQNPAALVETDDIFDVSDTPYGFSGLNTLRAAGVPNPPPPFAQRFIACFCSQTAAASQSKSAYILSSLESPCILCSLLRYFHILSKKLQKTC

Ga0257030_108365

Ga0257030_1083653

F042936

VWKTKEGIMKTSGIVDRGEDTIRNFEKVEQEGALTPPYLGKVYFRSRLRGKG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300023489: Human gut microbial communities from healthy child feces in Northridge, California, USA -- CDI_129B

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences