3300023487: Human gut microbial communities from healthy child feces in Northridge, California, USA - CDI_203B

Overview

Basic Information

• IMG/M Taxon OID: 3300023487
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133482 | Gp0296394 | Ga0257042
• Sample Name: Human gut microbial communities from healthy child feces in Northridge, California, USA - CDI_203B
• Sequencing Status: Permanent Draft
• Sequencing Center: University of California, Irvine
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 89444471
• Sequencing Scaffolds: 6
• Novel Protein Genes: 6
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Child Gut Microbiome
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Gut → Child Gut Microbiome

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: USA: Northridge, California
• Coordinates
  • Lat. (^o): 34.2381
  • Long. (^o): -118.5301
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047125	Metagenome / Metatranscriptome	150	N
F076189	Metagenome	118	N
F081354	Metagenome	114	Y
F092227	Metagenome	107	N
F092228	Metagenome	107	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0257042_100017	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	229663
Ga0257042_100087	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	89848
Ga0257042_100147	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	67567
Ga0257042_100206	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	53271
Ga0257042_102150	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	8397
Ga0257042_105636	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	3590

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0257042_100017	Ga0257042_100017119	F092228	MKKKCTLVLISVLTVVCIVSAYLLFFYNPSFNMVYDSDTDSYFNNSYLSYNDGTLAAADYRKTKVTAYDSKNNSTVNLPSNGCLINDNLFYINGDKLCCLDTTTNTRKIIDTDCRSFVCNNEVIAYRKNDSVILKDSDTLENIGDIKFDNQIYYINISDGNLYIAERIFEDKTDEYGYSFKVVKQYIFKKYDLKSCKLLKSKNANYVNGIRYVTVCKDTFYFFCDETQTVNNVCLDKDVNYPTIQHPDVKFITSNNDCVYYISEKTESAIILKTVESPYNGIWKLEVGSNKPAKIADKCDCDELLATRNFLYCYTINYILPRGMANSWVKGYLIDQLAIS
Ga0257042_100087	Ga0257042_10008723	F076189	MRINHFKIMQCPAGCVICRALFFYFLSPFIKPLLYVEKLQIGTVLPVVPDLYREFSEISTCFDLRAIQSAQKLLHMLCNFHENTLGLLIFYTNYAII
Ga0257042_100147	Ga0257042_10014761	F092227	MNEQKHKRLLRIGCLLLAGLFALSLLGSVLMMLLF
Ga0257042_100206	Ga0257042_10020647	F092227	MNEQKRKRILRVGCLILAGVFLLSVLGSVILMFLV
Ga0257042_102150	Ga0257042_1021504	F081354	LVRQNQQSSAHNFVKDFSPIFLKTSRRSPLKKGAVTEIPLEYGKTEVQILFEPLQAAISSMELPKNFENKKLPNTLR
Ga0257042_105636	Ga0257042_1056363	F047125	MDVVLLLMVLGVMSSGFWAADALDHIRREILQQEGKRRGWWS