NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300023445

3300023445: Marine microbial mat from Loihi Seamount, Hawaii, USA - Marker 34 Individual Assembly



Overview

Basic Information
IMG/M Taxon OID3300023445 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0118692 | Gp0139190 | Ga0257020
Sample NameMarine microbial mat from Loihi Seamount, Hawaii, USA - Marker 34 Individual Assembly
Sequencing StatusPermanent Draft
Sequencing CenterWestern Washington University
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size95810373
Sequencing Scaffolds41
Novel Protein Genes49
Associated Families41

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available27
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Parcubacteria → unclassified Parcubacteria → Candidatus Parcubacteria bacterium1
All Organisms → Viruses → Predicted Viral2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium2
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → unclassified Nitrososphaerales → Nitrososphaerales archaeon1
All Organisms → cellular organisms → Bacteria3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium1
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium TMED101
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium TMED81
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMarine Microbial Mats From Loihi Seamount, Hawaii, Usa
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Hydrothermal Vents → Microbial Mats → Marine → Marine Microbial Mats From Loihi Seamount, Hawaii, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine hydrothermal vent biomemarine hydrothermal ventmicrobial mat material
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Surface (saline)

Location Information
LocationLoihi Seamount, Hawaii, USA
CoordinatesLat. (o)18.903Long. (o)-155.257Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000060Metagenome / Metatranscriptome2944Y
F001536Metagenome675Y
F004768Metagenome / Metatranscriptome424Y
F006198Metagenome / Metatranscriptome379Y
F009841Metagenome / Metatranscriptome312Y
F010477Metagenome / Metatranscriptome303Y
F010791Metagenome / Metatranscriptome299N
F012282Metagenome / Metatranscriptome282Y
F013188Metagenome273Y
F013310Metagenome272Y
F015350Metagenome255Y
F016013Metagenome250Y
F017842Metagenome / Metatranscriptome238Y
F018553Metagenome / Metatranscriptome234Y
F019024Metagenome232Y
F020384Metagenome / Metatranscriptome224N
F021318Metagenome / Metatranscriptome219Y
F022429Metagenome / Metatranscriptome214Y
F022431Metagenome / Metatranscriptome214Y
F022673Metagenome213Y
F023622Metagenome / Metatranscriptome209Y
F024333Metagenome / Metatranscriptome206Y
F024883Metagenome204Y
F026028Metagenome / Metatranscriptome199Y
F037257Metagenome / Metatranscriptome168Y
F039340Metagenome164Y
F041253Metagenome160Y
F041255Metagenome / Metatranscriptome160Y
F054352Metagenome140Y
F054945Metagenome / Metatranscriptome139N
F072444Metagenome121N
F080154Metagenome115N
F083241Metagenome113N
F087758Metagenome110N
F088125Metagenome109Y
F089415Metagenome109N
F098073Metagenome104N
F099450Metagenome103Y
F104976Metagenome100N
F105342Metagenome / Metatranscriptome100Y
F105490Metagenome100Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0257020_100021Not Available26473Open in IMG/M
Ga0257020_105993Not Available2974Open in IMG/M
Ga0257020_112134All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Parcubacteria → unclassified Parcubacteria → Candidatus Parcubacteria bacterium1889Open in IMG/M
Ga0257020_115463Not Available1621Open in IMG/M
Ga0257020_117725Not Available1478Open in IMG/M
Ga0257020_119243Not Available1403Open in IMG/M
Ga0257020_121428All Organisms → Viruses → Predicted Viral1307Open in IMG/M
Ga0257020_122269Not Available1276Open in IMG/M
Ga0257020_122434Not Available1269Open in IMG/M
Ga0257020_122993All Organisms → Viruses → Predicted Viral1251Open in IMG/M
Ga0257020_124626Not Available1197Open in IMG/M
Ga0257020_125350Not Available1174Open in IMG/M
Ga0257020_126108Not Available1152Open in IMG/M
Ga0257020_129393Not Available1071Open in IMG/M
Ga0257020_130688Not Available1042Open in IMG/M
Ga0257020_130851Not Available1039Open in IMG/M
Ga0257020_134984All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium961Open in IMG/M
Ga0257020_135013All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → unclassified Nitrososphaerales → Nitrososphaerales archaeon961Open in IMG/M
Ga0257020_135820All Organisms → cellular organisms → Bacteria948Open in IMG/M
Ga0257020_136103Not Available944Open in IMG/M
Ga0257020_137936All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium916Open in IMG/M
Ga0257020_139993Not Available887Open in IMG/M
Ga0257020_140866All Organisms → cellular organisms → Bacteria875Open in IMG/M
Ga0257020_142656All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium853Open in IMG/M
Ga0257020_143227Not Available846Open in IMG/M
Ga0257020_143471Not Available843Open in IMG/M
Ga0257020_144448All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium TMED10832Open in IMG/M
Ga0257020_145234All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium822Open in IMG/M
Ga0257020_146605Not Available808Open in IMG/M
Ga0257020_146715Not Available807Open in IMG/M
Ga0257020_146799Not Available806Open in IMG/M
Ga0257020_147499All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium TMED8798Open in IMG/M
Ga0257020_149865All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon775Open in IMG/M
Ga0257020_150600Not Available768Open in IMG/M
Ga0257020_151577All Organisms → cellular organisms → Bacteria759Open in IMG/M
Ga0257020_151822Not Available757Open in IMG/M
Ga0257020_151920Not Available756Open in IMG/M
Ga0257020_152814Not Available748Open in IMG/M
Ga0257020_154071Not Available737Open in IMG/M
Ga0257020_154195Not Available736Open in IMG/M
Ga0257020_154836Not Available731Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0257020_100021Ga0257020_1000219F088125MMYLIDAGRVTLFSIFLVATLRFFYLAWQTHNAHSDDAVVQQHFLEHAVASSFAFIGSLIGVLYSIVHLFSAEQGTMPEIPFTVALFFLLVSGIAFMVHMIKEQSPSHPFYVREHGEDE
Ga0257020_105993Ga0257020_1059933F088125MTLLDAGRVALFSVFLVATLRFFYLSWQTRDAHSDDVVVQQHFMEHVVAAAFAFIGSLLGVLYSIVHLFSTEQGVLSEMPFTVSLVFLLVSGVAFMIHMIKEQTPHHPFYIRENNEDD
Ga0257020_112134Ga0257020_1121345F088125MMYLIDAGRVALFSIFLVATLRFFYLAWQTHNAHSDDVVVQQHFLEHAIASSFAFIGSLLGMLYSLVHLFSVEQGVLSEIPFTISMLFLLISGIAFMVHMIKEQTPHHPFYVRENGEDE
Ga0257020_115463Ga0257020_1154632F017842MPSYTMKDPDGVEHDILCSIAEMEEKKEQGWRVVFSPPKHNLIGHTGDVISHTSDDWKDVLKNIRDKNIGSTIEI
Ga0257020_117725Ga0257020_1177252F022431MIAKYIANRFLPAGSPNFYRLEDGELLSLIGWAESWSLEKVYDTAFEQVFPTKQLSDAKTDFDVWLMADNPKLPTIVREELIRDFRIHMATGRMDVLRLGVMAQRYAKRAMYVGLLLLFLFLVF
Ga0257020_119243Ga0257020_1192431F088125MMYLLDAGRVALFSIFLVATLRFFYLAWQTRHTHSDDVIVQQHFMEHAIAAAFAFIGSLLGVLYSLVHLFSVEQGVLSELPFTVSVLFLLISGIAFMIHMIKEQTPHHPFYVRENGEDE
Ga0257020_121428Ga0257020_1214282F009841MATYNLTRKQKGVSGQRIVPMGSGNNAELEERVSKMEDKLDTILTLLNKEANNDENRPKPISGNDGGV
Ga0257020_122269Ga0257020_1222691F022429YREINMSSITSFTEIWNGPSFLERKPSALRMAARDELGKKKREKSGKLKAGEHFAKNWDKDLWD
Ga0257020_122269Ga0257020_1222693F105490MNGNPGKQLRQESAIKRIELTVEEYEKILPAEKELLKVARKEKDLPPNVIPMLEKKIKKFEQKLERAQTTVENTKNNIRGG
Ga0257020_122434Ga0257020_1224343F088125MMYLLDAGRVALFSIFLVATLRFFYLAWQTHNAHSDDAVVQQHFLEHAIASSFAFIGSLLGAIYSIVHLFSVEQGTMSEIPFTASLFFLLVSGIAFMVHMIKEQNPSHPFYVRENGLNEAALKAKIKELESMSNV
Ga0257020_122993Ga0257020_1229932F089415VQRLQANLYSVFLTEEREGPPNEADWLYESDICRRELPSGSGRTYCESLKPDSLHVAQYLAYHRIKWFDGTKGKMVVGKRGQPRMCRCGNTESDTGAVKPQMW
Ga0257020_124626Ga0257020_1246263F026028MSICSNCYHRIKHRNAIEVGQLWNNEPFLGVVCSDKCKEEIEKKVADGTWMVMRSFPKTESDDGLPTAITDKQFGV
Ga0257020_124626Ga0257020_1246264F010477MKLRYAIFVPYLIFIGMMGGNVLVDALVIGLALAMYDFLFDGGGGGRPA
Ga0257020_125350Ga0257020_1253501F088125WQTHNAHSDDTVVQQHFLEHAIASSFAFIGSLLGVLYSLVHLFSIEQGVMSEIPFTVSLFFLLVSGIAFMVHMIKEQNPSHPFYVRENGLDEAALKAKVEELESMSNV
Ga0257020_126108Ga0257020_1261082F088125MMYLLDAGRVALFSIFIAATLRFFYLAWQTRNAHSDDAVVQQHFLEHAIAASFAFIGSLLGVIYSIVHLFSIEQGTMSEMPFTVALFFLLVSGIAFMVHMIKEQNPSHPFYVRENGLNEAELKARIKELESMSNV
Ga0257020_129393Ga0257020_1293931F087758MAKVKRSEFTDAVMRVTEEVMLVKEAAEKADPVPLMTERMSMSEGRKEFEKMSEFQRQMFLDANGQQKLLDMARGGS
Ga0257020_130688Ga0257020_1306882F021318MQAKINKREIDYKGQQLWLNPVDKTVYATDGAPTYSFGEVNGTPIYNYDSHFDAVKTAKDKLGTSYYHDAFVDPEFKSLAEDYVSDVKSGGRQRQAALRSSVNSAVDIVNVWETVLGKRDRVYAGKNLAKEIAVPNLLISIDTVTKFTGMEKLDEGMRARVKELPYTRATFTAAKYGLKFIIHEEARLKNVHNVLQDSIQVASTKIEQRQSFDVIDVVETNTAQAAIAAWDTFVSSSDRSTGDPTIDIGIASLNIEGSGVGGRLNR
Ga0257020_130851Ga0257020_1308512F024333MSVNFKDKFHIWLDDVKDKVFNIFGRDKSEKEENLYETRWVWYHSALVIELFIIIILLWYIAI
Ga0257020_134984Ga0257020_1349841F088125MMYLLDAGRVTLFSAFLIATLRFFYLAWQTRNAHSDDTVVQQHFMEHAIASSFAFIGSLIGVVYSIVHLFSIKQGIMSEIPFTVSLFFLLASGIAFMIHMIKEQTPHHLFYIRENGEDD
Ga0257020_135013Ga0257020_1350132F024883MKLKKRKKKNVWEEVSETIEAFKNNPEYAPDPEHVQIYITTKDGGIVELHIGYDGEKILKTFDSFDSEEELEEQRIIERMEDPEGGILLN
Ga0257020_135013Ga0257020_1350133F004768MKTATIEILEEGETIFGSRTGGNYMVREYEDGEEMGGSFFKTIEEAEVRVHEYQKIET
Ga0257020_135820Ga0257020_1358202F041253MRCESCGKPATQIREMYSYCDRCWARNYSKTNGVPFLDALKDSLGKMGLTRKEGETIDQWSKRCRAVTPKQYGGLA
Ga0257020_136103Ga0257020_1361031F010791MSFEFRAGRKRVVKSVETVEEANKLMRKMIAIRNENSLWENIDVKTGHLRAVDELEKLVGTIFDVFDTMSIYMNGKSVRRIWSRGF
Ga0257020_137936Ga0257020_1379361F012282TSATDVKFFVITNPDQVYYIQCSLTLSAAEAAICLNYPVTVSSTASSGSTVTGNSSYYLLAAGGLETELTCRVLGRAKFPGEGNDDAYPIVEVWLNTHRDRYVTATASTA
Ga0257020_139993Ga0257020_1399931F054352MKTSTQLLLEAKRHKDIRDVMLDSLEKFRATRTMVQDCCDDLGVSWGTFYKWAKDMNIEVGDYHFAAARR
Ga0257020_139993Ga0257020_1399932F039340MFRPGYHFDNHKLLVDQLHTIMDEAAVEYDTDEDVVDDFTQYVKDWASRRSEARLDKAEG
Ga0257020_140866Ga0257020_1408663F105342RMLGFSKFEVYGFDSCIIGQHHAYEQKENDDEQVIDVVVADKEFRCTAAHYHQAQEFVQRTGKNGEFYDLAVHGDGLISHIIKNPDSLRRKEEVN
Ga0257020_142656Ga0257020_1426562F054945MKWVILIYLAMWTNTPEVIKYTRLEFPASNFQECIDIAQQINDITNAHKSDVPYVRSFYWVYNNMLDEIKAECVYADPAAPVPEWYKYYWSHPEWFKEYTRKQWKEDKKRDWRIPPDHPMIPPE
Ga0257020_143227Ga0257020_1432272F023622MKTFKEFQGKPPTQIVEQVYFKIRIPDMSTMFMKASSESAVKLDMRKKLKPDVVKEVTIERVTKAEMRKIYRAMGQGKEDEKEKESAEEK
Ga0257020_143471Ga0257020_1434712F013310MEWLSWGNAAYIVAIIVGGALTFAATKYKKLLKEIQEALNTYHEAAKDGTITEEERNKIVKEMLDIASAGVKIFWRF
Ga0257020_144448Ga0257020_1444482F016013MTKDIVPIKSVNAVDISPLLREVIEYTKDQNAVGDLESLISKVPNKDSLDWKLISGVLCNAIIEWIAKDTSNRKDLLVHLQSEVGYLLQRMGLTM
Ga0257020_145234Ga0257020_1452341F088125MMYLLDAGRVTLFSAFLIATLRFFYLAWQTRNAHSDDAVVQQHFMEHAMASSFAFIGSLIGVVYSIVHLFSIKQGIMSEIPFTVSLFFLLASGIAFMIHMIKEQTPHLLFYIRENGEDD
Ga0257020_146605Ga0257020_1466052F020384MHHKRIHSYQKSLQKLRNIVSETLRSSGQGRQIEFDNQMRRAIRHIQIIKRNVPSGDKGDLAMVEAYKLYDRLQRLSQYPTYFVDNTRKNPGRVASDRGRDYTNARPASVRWDVAAMMAVPMGGPDRNWWRPPPRPAPVKHYTREELEHEYPAFTVSKKRDRTA
Ga0257020_146715Ga0257020_1467152F015350MKIYKWLIIIVVAILVGWQYDAFQKNLHEVEIRIKKFESVDLFNILEQISLAHIESVDTVDILNKKQMELQALEEEIKEKFTIQERELRAQVKTIETKLQKLRSELHDGLTKIERNVSTIDSVVDEKFKTLWMMINNK
Ga0257020_146715Ga0257020_1467153F099450SSETIWAAIVLTWNPVVRTIDKEFSTEVACWNYYENGVGESKFGTQHLDHQGNPPTKDFHFGKMDHREYPIRTYRGINDEQGQVWLTCDIKGRYEDL
Ga0257020_146799Ga0257020_1467994F080154MKDFFRELYWVVFLLILIIVVGVLGQLNGGDMDIYLKAQRINNG
Ga0257020_147499Ga0257020_1474992F013188MATYSDRVVKSVTLYEPGPLPEEAEDLGMYVVTELKRLGNTLFNQATFRLERMHVE
Ga0257020_149865Ga0257020_1498652F083241MTPWAMLQYVDIVEPIGDAFTDWEAFASAWENPAAKLMPVEYQDEYKMRHWFPGAPTPGYFLQLSTPTFSPDATSVPAPVSFELFTTGRRSIDVRTA
Ga0257020_150600Ga0257020_1506002F018553MLCIPRLRIAILNEEIALWENRLRDNPDDIPYLGYIRTTLKGRVKELEENERLDQEKDNGTKC
Ga0257020_150600Ga0257020_1506004F072444MMPERENNAFWEIAEIIDREMSILRKMRPVGPKEKALLKKMMDDKKKEYEKRTNSQP
Ga0257020_150600Ga0257020_1506005F022673MKKEQIVSPRVEIAEKIHEELLVSLELERKLLQKELTVQETMSERVEVRKDLQKCERKIKELTEQLQKENDRSKVT
Ga0257020_151577Ga0257020_1515772F001536MIKWIKSLIEKIFGKFCKCEEPLILEEEVKQEEAKEVIATEPEKIQCNIHSRFKKACPICNEAAK
Ga0257020_151822Ga0257020_1518221F098073SMVMKTPEEYFADGREWLVKAERIAKEYEDQETFDTSANLAVLAMASTFLGICAQFIRDQEG
Ga0257020_151920Ga0257020_1519203F104976KKTGWFDKARYLHRILNHIGRIRQLIVPEYEKTPALAKCWQTYLNVQGMDDKNETRDAKRVEFHDVLDYSVNRFGSDAVESPIAEVRAHGRGYAVVNWKSIYVSKLKDTSLRGYYEPERAKRSGKKSLADTDYWAVKHPVK
Ga0257020_152814Ga0257020_1528141F000060EFNYRYQVIGDTPWERIKTLKGFLEGRIRALALEEVDKLKHQAKLSKLNYLKNGGEGLEHEILELKAEIIEAESHHASLEEAFELTKDEIKTLKKLIKELYAIAEPTRIKGYTDEQMFEANAANEFTVNIGREIQAEMIANGRPSAAKLRNAMSNPHTWNALKQVGLIPKATKILEGNVNPQLKIELKGVEDETV
Ga0257020_152814Ga0257020_1528142F019024MKLYKLEASNWEAFFGTSEEPIKRDVIRLAQTPSNDAFLFLAKDTFDELELLDSVPIG
Ga0257020_154071Ga0257020_1540712F006198MEVELDVNCNNCNTKYTMIYDSDDIQSRQEEHAFHCSFCGILMEPYYDEFFEED
Ga0257020_154195Ga0257020_1541952F041255MANVSDVKSKFFEPQTVDDNAVSTTGTATTLVIAD
Ga0257020_154836Ga0257020_1548362F037257MKKFTIDISHASPAQLSTIALELKIMSNSWEKFGPRISINGQAVEPPALRMTPTEAINKRPRKRHKLAMFI

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