3300023249: Saline water microbial communities from Ace Lake, Antarctica - #937

Overview

Basic Information

• IMG/M Taxon OID: 3300023249
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0114820 | Gp0255770 | Ga0222678
• Sample Name: Saline water microbial communities from Ace Lake, Antarctica - #937
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 161447324
• Sequencing Scaffolds: 7
• Novel Protein Genes: 7
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae → Marinobacter → unclassified Marinobacter → Marinobacter sp.	3
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Aminicenantes → unclassified Aminicenantes → Candidatus Aminicenantes bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Saline Lake Microbial Communities From Various Lakes In Antarctica
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → saline lake → saline water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Hypersaline (saline)

Location Information

• Location: Antarctica: Ace Lake
• Coordinates
  • Lat. (^o): -68.4725
  • Long. (^o): 78.188
  • Alt. (m): N/A
  • Depth (m): 16

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029620	Metagenome	187	N
F031722	Metagenome	181	N
F052986	Metagenome	141	Y
F077964	Metagenome	117	Y
F091299	Metagenome	107	Y
F104423	Metagenome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0222678_1029998	Not Available	940
Ga0222678_1047445	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae → Marinobacter → unclassified Marinobacter → Marinobacter sp.	689
Ga0222678_1056666	Not Available	611
Ga0222678_1056762	Not Available	611
Ga0222678_1058516	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae → Marinobacter → unclassified Marinobacter → Marinobacter sp.	598
Ga0222678_1070990	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae → Marinobacter → unclassified Marinobacter → Marinobacter sp.	525
Ga0222678_1075822	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Aminicenantes → unclassified Aminicenantes → Candidatus Aminicenantes bacterium	502

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0222678_1029998	Ga0222678_10299982	F091299	MKEEKEKDKLENITGSGIEVTIKGKEYKLGIFGMRDLADFRQYIKGQRIKIIQATIVSMEEKLILINSILDSNVNETKELQTMDGVTFMLWRSLKKYQPELTLADVDDMIDLDNISEISNVLMNIGG
Ga0222678_1047445	Ga0222678_10474452	F029620	MAQQLRMLPASSGGAAQVFPLRQGLIDITTGTVTDPTNGRRPLIAHCVADGSLTLTWQDTSATVVSFIAGDDFSMVEAEAVAVTTGSFHFA
Ga0222678_1056666	Ga0222678_10566661	F077964	MKKLITITAILFLLSPAIALCQTAESKSSPPTIQKISKTSYYYNYNITEVQKEPEGGGEAETFYQYNYVRIQGKPTKRKVLDAIEAAESSTVTAEVEAVATERSTAKTQLADIAALSYAQVDNYVDNTFGNLPVAQKTALKKLYK
Ga0222678_1056762	Ga0222678_10567623	F031722	MDETATTQTPTQKVTKPRFYHEQAAAEKLGLSKETLRHWRVGYTVKSKGTRYTYPPKMKDGEGTTWKKEYPTKFSPILWDADFVDTLASALHTQRIAMGDLKQ
Ga0222678_1058516	Ga0222678_10585162	F052986	RSNLSNETMIEHALVRYGYGTLIQVRKMDTQDFLDAVEYQEITSAIEQYRMEQAQR
Ga0222678_1070990	Ga0222678_10709901	F052986	MIEHALVRYGYGTLIQVRKMDTQDFLDAVEYQEITSA
Ga0222678_1075822	Ga0222678_10758221	F104423	MKAHRIRKAESLYNKERKHIFLEVEKSRWLEIESLDGVTYDSIQKFVENENKTGIKIVGFTDKHFQYGTIKDWYHSGIIMDIKKK