| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300023241 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0114820 | Gp0255749 | Ga0222657 |
| Sample Name | Saline water microbial communities from Ace Lake, Antarctica - #474 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 176108874 |
| Sequencing Scaffolds | 25 |
| Novel Protein Genes | 26 |
| Associated Families | 20 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → Smithella → unclassified Smithella → Smithella sp. F21 | 1 |
| Not Available | 12 |
| All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → unclassified Planctomycetales → Planctomycetales bacterium ZRK34 | 1 |
| All Organisms → cellular organisms → Bacteria | 2 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfotignum → Desulfotignum balticum | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria | 2 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria | 1 |
| All Organisms → cellular organisms → Archaea → DPANN group → Nanoarchaeota → unclassified Nanoarchaeota → Nanoarchaeota archaeon | 1 |
| All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dependentiae → unclassified Candidatus Dependentiae → Candidatus Dependentiae bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria → unclassified Campylobacterota → Epsilonproteobacteria bacterium JGI 0002006-B18 | 1 |
| All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Saline Lake Microbial Communities From Various Lakes In Antarctica |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | aquatic biome → saline lake → saline water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Hypersaline (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Antarctica: Ace Lake | |||||||
| Coordinates | Lat. (o) | -68.4725 | Long. (o) | 78.188 | Alt. (m) | N/A | Depth (m) | 13 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F007072 | Metagenome | 358 | Y |
| F010230 | Metagenome | 306 | Y |
| F029620 | Metagenome | 187 | N |
| F039448 | Metagenome / Metatranscriptome | 163 | Y |
| F042665 | Metagenome | 157 | N |
| F043706 | Metagenome | 155 | Y |
| F054792 | Metagenome | 139 | Y |
| F060609 | Metagenome / Metatranscriptome | 132 | Y |
| F063346 | Metagenome | 129 | N |
| F067269 | Metagenome | 125 | N |
| F067270 | Metagenome | 125 | Y |
| F069520 | Metagenome | 123 | Y |
| F069661 | Metagenome | 123 | N |
| F078142 | Metagenome / Metatranscriptome | 116 | Y |
| F089824 | Metagenome | 108 | N |
| F089876 | Metagenome | 108 | Y |
| F092080 | Metagenome | 107 | Y |
| F094884 | Metagenome / Metatranscriptome | 105 | Y |
| F096357 | Metagenome | 104 | N |
| F098516 | Metagenome / Metatranscriptome | 103 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0222657_1005444 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → Smithella → unclassified Smithella → Smithella sp. F21 | 3422 | Open in IMG/M |
| Ga0222657_1006532 | Not Available | 3010 | Open in IMG/M |
| Ga0222657_1007819 | All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → unclassified Planctomycetales → Planctomycetales bacterium ZRK34 | 2664 | Open in IMG/M |
| Ga0222657_1010224 | All Organisms → cellular organisms → Bacteria | 2203 | Open in IMG/M |
| Ga0222657_1010328 | Not Available | 2190 | Open in IMG/M |
| Ga0222657_1021989 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium | 1295 | Open in IMG/M |
| Ga0222657_1028729 | Not Available | 1070 | Open in IMG/M |
| Ga0222657_1028928 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfotignum → Desulfotignum balticum | 1065 | Open in IMG/M |
| Ga0222657_1030258 | Not Available | 1033 | Open in IMG/M |
| Ga0222657_1037838 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria | 883 | Open in IMG/M |
| Ga0222657_1038662 | Not Available | 871 | Open in IMG/M |
| Ga0222657_1046112 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 769 | Open in IMG/M |
| Ga0222657_1046676 | Not Available | 763 | Open in IMG/M |
| Ga0222657_1049807 | Not Available | 727 | Open in IMG/M |
| Ga0222657_1051957 | Not Available | 705 | Open in IMG/M |
| Ga0222657_1054393 | All Organisms → cellular organisms → Archaea → DPANN group → Nanoarchaeota → unclassified Nanoarchaeota → Nanoarchaeota archaeon | 681 | Open in IMG/M |
| Ga0222657_1058491 | All Organisms → cellular organisms → Bacteria | 646 | Open in IMG/M |
| Ga0222657_1060828 | Not Available | 628 | Open in IMG/M |
| Ga0222657_1061207 | Not Available | 625 | Open in IMG/M |
| Ga0222657_1062444 | All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dependentiae → unclassified Candidatus Dependentiae → Candidatus Dependentiae bacterium | 617 | Open in IMG/M |
| Ga0222657_1067914 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria → unclassified Campylobacterota → Epsilonproteobacteria bacterium JGI 0002006-B18 | 578 | Open in IMG/M |
| Ga0222657_1071504 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria | 556 | Open in IMG/M |
| Ga0222657_1072512 | All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon | 550 | Open in IMG/M |
| Ga0222657_1072562 | Not Available | 550 | Open in IMG/M |
| Ga0222657_1080465 | Not Available | 509 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0222657_1005444 | Ga0222657_10054441 | F060609 | MNELEKSESVSVSRREFCRKAIKRSSVAAAVGVAGYLAYRKPAIRSFFGAGDAYAANTGAGSFSLKGDSN |
| Ga0222657_1006532 | Ga0222657_10065321 | F067269 | MIKSHTGSYTCALERQLPDSDASFFWDTSDSKKKRKGYRDGLKYDAASGTTRERYRGYDIVCTRLKNSNFCAHTIDVLGEGVGFEKNTLKSEDTEEVYAMLDEWIDNNNTNKTKTKTEQL |
| Ga0222657_1007819 | Ga0222657_10078195 | F039448 | MNTSKAIELAMAETLRKYAEMGAAVVVRAWQSLESDGSWNENPDRKFPMIDVRCSPPGHDDNESTLQVECRIMMGTNTDDDKSHAFISNMYEDVQDVCDTLFAQYRTGVFTGTELAYFLARVVAETSTDAFQFGGLTFGDGLAPADDNGINM |
| Ga0222657_1010224 | Ga0222657_10102241 | F078142 | MSFETKAFNSIYASITIARCQIRIGRTVIAKALCAGIGKLRENTDEGQLGSIDANVRLLATDEPDDEIKTGTVIEILQNGQDTKTGWVKARVGGRFPVGGLTRLGLEAVNE |
| Ga0222657_1010328 | Ga0222657_10103285 | F007072 | MELSKLGKKGQLSLDDAPTVVLLVGLVFLVMATIAMIGEKFGDSMADAQTLSATCNHSGNGGTGSVYTDCGTAYNTTVDLQTEIGNNTSIAGIVLTISLVGIVLTILIGVFIGVRGGTAR |
| Ga0222657_1021989 | Ga0222657_10219891 | F069520 | MADIDPQAFGELIGDVKMLTKQTERSREDQMVANNILFAKIDNLSANGCVQGEGLRNRIKVLEEKPAKLVAIGSMILAALAVIGGACVWLLEKFRTL |
| Ga0222657_1028729 | Ga0222657_10287293 | F067270 | MNLPSEFIKYLRDEIKHFDKELISILELPNVKSLRDRIKKDKRDTKVMLALYGQMIACNIHIRTVKAKIRACNDKAMALLGHRLQRVKRKYKDSHRDTSYDL |
| Ga0222657_1028928 | Ga0222657_10289281 | F063346 | EPTKGRRALSTARDGGQERLPHSTFDVERSMFTRLRRRQRRPWFDVQIVASEITTKPSYHVEITYTGQEF |
| Ga0222657_1030258 | Ga0222657_10302582 | F098516 | MTISKATSFGALTDHFAILETVHDAGTLADIMVLVASSKVPRAQSRADAQDENEDIAASAYSGNSAEEITEVSCTYALKSGTLDLSDLVIGELAVQIMAESLELTTANGGWPQITVTGYLGLETITAPTSYTNQFTLPAISVIGMKQAQVLGFTVTTGRLTGSKIGFNCSMAEQLDGVGEPAAHGVSGGTGEVTADFVRIDDAPAWELAAVLADSGDGAVFMAEVTQDPQADEGQAVWHTASGAASFNLARLAS |
| Ga0222657_1033783 | Ga0222657_10337832 | F010230 | KAVQFRQVWSKLVPLLVSINGNEVRLLQPSQVWLKVVPLLVSINGKELRLLQYRQVKLKLVPLLVSINGKELRLLQLFQVALNLVPLLVSINGNELRLLHSRQVESKLVPLLVSINGNELRLVQFCQVEVKLVPSLVSINGNELRLLQFRQVELKLVLLLVSINGNELRLLQLYQVKLKLVPLLVSINANELRLVQSRQVELKLVPLLVSINGNELRLLQFCQVELK |
| Ga0222657_1037838 | Ga0222657_10378383 | F063346 | KATRPPRLSEPTKGRRALSTARDGGQERLPHSTFDVERSMFDVQIVASEITTKPSYHVEITYTGQEF |
| Ga0222657_1038662 | Ga0222657_10386621 | F098516 | VHDAGTLADIMVLVASSKVPRAKTRADAQDANEDIAASAYSGNDAGAIYEVSSTYALKSGTLDLSDLVIGELAVQIMAESLGLTTANGGWPQITVAGFLGLQTITAPTSFTNQFTLPAISVIGMKQAQVLGFTVSAGRLTGSGITFNCSMAEQLDGVGEPAAHGVSGGTGEVTADFVRVDDAPAWELAAVLTDSPFLAEVTADPGEDQGQAAWHTAAGAAGLSLARLAT |
| Ga0222657_1046112 | Ga0222657_10461121 | F096357 | GYSMNNLLDHPIIKRLHRESSVTLTDLLDRKLFIEPPAEPCGYRHPSVWFLCYQEDLAQAEHERLRAARRQNPSLIHAAALVVAGATGKLSEEQKTMAFYFTRYVEAREYELDQLVRRSTGSHNSAEIRKEEAAERMETAHRLWLKLDTPERDRCAIIAKRMGYPVDTVRKWRRKGWRSG |
| Ga0222657_1046676 | Ga0222657_10466761 | F069661 | KEKYNNFIKLATGEIVKKQEEIKQLQGFIEKYREDYEEGEE |
| Ga0222657_1049807 | Ga0222657_10498071 | F029620 | MAQQLRMLPASSGGAAQVFPLRQGLIDITTGTVTDPTSGKRPLIAHCVADGSLTLTWQDTSATVVSFIAGDDFSMVEAEAVAVTTGSFHFA |
| Ga0222657_1051957 | Ga0222657_10519573 | F069661 | AKLKISKEKYNNFIKLATGEIVKKQEEIKQLQGFIEKYRDDYEEGEE |
| Ga0222657_1054393 | Ga0222657_10543933 | F094884 | KGEIKFAYGYEVDDNEVSLNDLAMLNSFLDKIKAKAEEDFSERLEVNDKEFSVEGTKEXVLQ |
| Ga0222657_1058491 | Ga0222657_10584912 | F039448 | LAMAETIRKYAQMGEGVTIRAWQSLEADGSWKENPDRRFPMIDVRCSPSKTDDNESTLQVECAILMGTNTDDDKSHAFISNMYEAVQGVCDTMFSQFRSGVFTGEEIAYFLAKIVEDTSSDAFQFGGLTFGDGLAPSDDGGKSMIGITMIVHYGRSDF |
| Ga0222657_1060828 | Ga0222657_10608282 | F042665 | MTPPKMSFATLIMLSSVVTVVVTLGVIPLLTLTGVGPGWGLFFAPAAGMAAGYSAARWLGGYIDDK |
| Ga0222657_1061207 | Ga0222657_10612071 | F092080 | MQDKRITIRIPFEIWKDLRELQTVGKISSIQQAAVSGMNKLIESLKWGEQEMRDNLKGAAKKRVLDCLVREKPLGNWEDVHGERTDADADRS |
| Ga0222657_1062444 | Ga0222657_10624441 | F089876 | KREMKKSQYRQKFDALAAEINQNLMATAVSYGNKLYEKSGWGSMVFYNKMASGAYDINVYPQKVTDRDKNNSGVPVSQEPIAFSKIMIATSVLAGKLPDGKVIADDKVYGKAMYELWKRNWSMTGGNGSNTLMLTYQNLFTYGWAAWRVYPRRVQVKRNGVDKILFDDIYREPLECTRTWMGVGFNNGDVWSQTEVYYEKDMPKE |
| Ga0222657_1067914 | Ga0222657_10679142 | F010230 | LMPLLVLINGNELRLVQFCQVEVKLVPLLVSINGNELRLVQFCQVEVKLVPSLVSINGNELRLVQYCQVEVKLVPLLVSINGNELRLVQDRQVKVKSVPLLVSINGNEVRLLQLVQVARK |
| Ga0222657_1071504 | Ga0222657_10715042 | F060609 | NMNELPKSDAVSVGRREFCRKAIRGSSVAAAVGVAGYLAYRKPAIRSFFGAGDAYAANTGAGSFSLKGDSN |
| Ga0222657_1072512 | Ga0222657_10725121 | F054792 | KVVLKKLDIGYLKLKVVGDSPYLPEPMDMAVLEKYNKIKSKQNYDKDDLSEEEKVKAKFYYTEDNKYGIPARAIYNSMIRGSSYLFDIKQGGMRNIKEGVTIKGDILPLKFKKQTEICHWGRTSGMKGSPRKILRNAFYDWEVEITVEFNKANLSAEQIINVLNWAGFHIGVGGFRKEKTGNF |
| Ga0222657_1072562 | Ga0222657_10725621 | F089824 | IAYIIKAYKSFDNTITQYDIADEYMIRQGIEITPRRVRRIIEKLIEKGLPILSSPHYPHAGYCWFTYDSERVECINRLRRKAAKIFIRARRINRNCMAVRDKREKIEQEEMF |
| Ga0222657_1080465 | Ga0222657_10804651 | F043706 | MHILYGILSTALLVHLVAMALDTGQPSVRVIILCAVVIIFAGAE |
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