Sample 3300023234

Basic Information
IMG/M Taxon OID	3300023234 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0114820 \| Gp0255727 \| Ga0222635
Sample Name	Saline water microbial communities from Ace Lake, Antarctica - #139
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

3300023234 Open in IMG/M

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0114820 | Gp0255727 | Ga0222635

Sample Name

Saline water microbial communities from Ace Lake, Antarctica - #139

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	132062988
Sequencing Scaffolds	29
Novel Protein Genes	30
Associated Families	22

Dataset Contents

Total Genome Size

132062988

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1
Not Available	18
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	2
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium RBG_13_41_22	1
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Casjensviridae	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria → unclassified Campylobacterota → Epsilonproteobacteria bacterium JGI 0002006-B18	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Psychrobacter	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria

Not Available

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales

All Organisms → cellular organisms → Bacteria

All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium RBG_13_41_22

All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Casjensviridae

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria → unclassified Campylobacterota → Epsilonproteobacteria bacterium JGI 0002006-B18

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Psychrobacter

Ecosystem Assignment (GOLD)
Name	Saline Lake Microbial Communities From Various Lakes In Antarctica
Type	Environmental
Taxonomy	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Ecosystem Assignment (GOLD)

Name

Saline Lake Microbial Communities From Various Lakes In Antarctica

Type

Environmental

Taxonomy

Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	aquatic biome → saline lake → saline water
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Hypersaline (saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

aquatic biome → saline lake → saline water

Earth Microbiome Project Ontology (EMPO)

Free-living → Saline → Hypersaline (saline)

Location Information
Location	Antarctica: Ace Lake
Coordinates	Lat. (^o)	-68.4725	Long. (^o)	78.188	Alt. (m)	N/A	Depth (m)	15
Location on Map

Zoom:	Powered by OpenStreetMap^©

Location Information

Location

Antarctica: Ace Lake

Coordinates

Lat. (^o)

-68.4725

Long. (^o)

78.188

Alt. (m)

N/A

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F007738	Metagenome	345	Y
F010230	Metagenome	306	Y
F013484	Metagenome / Metatranscriptome	271	Y
F014583	Metagenome	261	N
F020325	Metagenome / Metatranscriptome	224	Y
F024490	Metagenome	205	Y
F029620	Metagenome	187	N
F042665	Metagenome	157	N
F043706	Metagenome	155	Y
F046685	Metagenome	151	Y
F054555	Metagenome	139	Y
F056627	Metagenome / Metatranscriptome	137	N
F058677	Metagenome	134	N
F063346	Metagenome	129	N
F067269	Metagenome	125	N
F068453	Metagenome	124	N
F071991	Metagenome	121	N
F073114	Metagenome	120	N
F083597	Metagenome / Metatranscriptome	112	N
F083694	Metagenome	112	Y
F091388	Metagenome	107	Y
F096357	Metagenome	104	N

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0222635_1000665	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	11958	Open in IMG/M
Ga0222635_1005425	Not Available	2598	Open in IMG/M
Ga0222635_1008896	Not Available	1881	Open in IMG/M
Ga0222635_1009509	Not Available	1802	Open in IMG/M
Ga0222635_1009521	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	1801	Open in IMG/M
Ga0222635_1013246	All Organisms → cellular organisms → Bacteria	1445	Open in IMG/M
Ga0222635_1017483	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium RBG_13_41_22	1192	Open in IMG/M
Ga0222635_1019484	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	1105	Open in IMG/M
Ga0222635_1020110	Not Available	1081	Open in IMG/M
Ga0222635_1020375	Not Available	1072	Open in IMG/M
Ga0222635_1021412	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Casjensviridae	1035	Open in IMG/M
Ga0222635_1024247	Not Available	951	Open in IMG/M
Ga0222635_1028053	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria → unclassified Campylobacterota → Epsilonproteobacteria bacterium JGI 0002006-B18	860	Open in IMG/M
Ga0222635_1028824	Not Available	845	Open in IMG/M
Ga0222635_1032336	Not Available	781	Open in IMG/M
Ga0222635_1036386	Not Available	722	Open in IMG/M
Ga0222635_1037065	Not Available	712	Open in IMG/M
Ga0222635_1041800	Not Available	657	Open in IMG/M
Ga0222635_1042200	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	653	Open in IMG/M
Ga0222635_1042518	Not Available	649	Open in IMG/M
Ga0222635_1043033	Not Available	644	Open in IMG/M
Ga0222635_1044442	Not Available	630	Open in IMG/M
Ga0222635_1045258	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria → unclassified Campylobacterota → Epsilonproteobacteria bacterium JGI 0002006-B18	622	Open in IMG/M
Ga0222635_1052750	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Psychrobacter	561	Open in IMG/M
Ga0222635_1056025	Not Available	538	Open in IMG/M
Ga0222635_1056666	Not Available	535	Open in IMG/M
Ga0222635_1060668	Not Available	511	Open in IMG/M
Ga0222635_1062144	All Organisms → cellular organisms → Bacteria	503	Open in IMG/M
Ga0222635_1062503	Not Available	502	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0222635_1000665	Ga0222635_100066510	F063346	MYSTIYNKDKATRPPRLSEPTKGRRALSTVRDDGQERLPHSTFLPRETFFLFHWGDVERSMFTRLRRRQRRPGFDVQIVASEITTKPPYHVEIMYTGQEF
Ga0222635_1005425	Ga0222635_10054255	F083694	MEKVDKLHKRQIARLLTHLERTGQLTVELEKDLKRAYRFAFEDVETLIQGLDKEKEDAKS
Ga0222635_1008896	Ga0222635_10088961	F013484	MSICLDLSDCTLSTEHQAIVDALNEFLALLPDGNDPDEALRLAMMILEAADVAPQAALAQAAGFTQSRSLRVYKQRLSEQGLAGLFDHPIPGRPAITTQTVVEKAVYQTILSAVIEDHALPDDAALAERVNQALREAQVPEAGRVTASMVETIRLHWGIQRPVIAQQLRAAQSLETCETDTVRLGQTRVGGAFILAILLLETGWLKSAHMLPMASGYAVMATQWLLTAIFSVIYGIRRAFHLDDVRDIGFALVTGRPRPLSHGTFQHLLWAIPTEKAERFYKATAEQEVQALGEGTRRISLDGHNLPRYTHIVELVKGKIGNTGRILKAEELVLAYDLDAHLWLAMRVYQGTKKLSKGLVEIVRELLHHRGQFKGLLRLFFDKGGYQGQIFRTLSDDPQVHFYTPAVRYPTNVKQWEQLKETDFDLEPFVFDKHADLPAKERPVYRLADTEMNINVREGHKVVGTVKLRAIVLHDPQGEKPAERWPVVMLTDDRQINARTLLNEYGDHWGQEFGHRIGKHDLYLDILPPGYVLKTWRDDQGELHREVEYDQTAFFLSAWLHCLVFNLMTRFAQAMGGEYTKMWAGTLLRKFIRRP
Ga0222635_1009509	Ga0222635_10095093	F067269	SFFWDTSDSKKKRKGYRDGLKYDAVSGTKRVRYRGYDIVYTRRKNSSFCAHTIDVIGEGVGFEKNTPESEDTEELYAMFDEWIDNNNSRYKKERF
Ga0222635_1009521	Ga0222635_10095211	F007738	MSGADITADVQAAYVEAGIAAGNGTGAPIVTINRTGTPTGDEWNPTSGASVTHTFTAKPSGKAYTQRTGLALGAKEQVYSLVNIGVTITPSTTDVLTIDGVEWSVLEVIPMDSAGYVISWLVKVY
Ga0222635_1013246	Ga0222635_10132461	F063346	YSTIYNKDKATRPPRLSEPTKGRRALSTARDGGQERLPHSTFLPRETFFLFHWGDVERSMFDVQIVASEITTKPSYHVEITYTGQEF
Ga0222635_1017483	Ga0222635_10174831	F058677	MNQITPEELFQIIGEQLMTIRKQNQEIMRLQTEVTKLKP
Ga0222635_1019060	Ga0222635_10190604	F042665	SVVTVVVTLGVMPLLALTGSVAGLFFAPVAGMAAGYSAARWLGGYIDDK
Ga0222635_1019484	Ga0222635_10194843	F071991	TDTVAACDNAFHFMHTLKAQRKDRVMLGGGLSDYECQWTPPDAKGRPVKRKMHSGGVAQQRTGRYYVTAQGGAQLWKIMKPLPKLPSHDRPQAIAKGETVLMCNDLHDFDWALLDRDYYVRAAQDLVDSTGG
Ga0222635_1020110	Ga0222635_10201101	F091388	MDKSSELRLKKKAKFYFTEKVICHVIKDPKGFVNGWFRSDLIDDWYFWFEDQRYPKEERRLFLV
Ga0222635_1020375	Ga0222635_10203751	F083597	MKQEFVNFKIFIWAIAIILGLFGISFGMIANAQLKADSAYKSIYQIKTDIEVIKTDVNWIKNNI
Ga0222635_1021412	Ga0222635_10214121	F067269	MIKSHTGSYTHAIERQLPDSDASFFWDTTDSKKKRKGYQDGLKYDAVSGTTRERYRGYDIVYTRLKNSNFCAHTIDVLGEGVGFEKNTPESEDTEELYAMFDEWIDNN
Ga0222635_1024247	Ga0222635_10242472	F058677	MNQINAEELFQIIGEQLMTIRKQNQEIMRLQTEVTKL
Ga0222635_1028053	Ga0222635_10280532	F010230	LLVSINGNELRLVQSRQVELKLMPLLVLINGNEVRLVQLFQVKAKLVPLLVSINGNELRLVQFRQVSPKLVPLLVLINGNELRLVQLYQVKPKLVPLLVSINANEVRLVQSRQVWVKLVPLLVSINGNELRLVQLY
Ga0222635_1028824	Ga0222635_10288241	F073114	SLNAVRDLLESEDIKVPGGPYLARQLEQIGYRHTTRCNTSPSEVQRFPKAPNRCRLYHIADHTGTDPASIMALYDAAQRLDDGGPVRSTVIKMPGL
Ga0222635_1032336	Ga0222635_10323362	F029620	MAQQLRMLPASSGGAAQVFPLRQGLIDITTGTVTDPTSGKRPLIAHCVAEGSLTLTWSDNSSTVVSFIAGDDFSMVEAEAVAVTTGTFHFA
Ga0222635_1036386	Ga0222635_10363861	F046685	MQEQMNPQYQSIPVSSDELYANAVQEDKIKNIVSQLDPENQLKEIEMRIRGYKRNVFTRDWEKIDPDSPEPPKLLISRFISYLSSIMNQNTTQGNLSDRQINALMSQAVNYTADELDGNSAIYNLDNNYTERTRIGHIMLNSMFFTLNRSLNGQEGKRMWKAMTISDNLTQDDKGKFGEALKFWK
Ga0222635_1037065	Ga0222635_10370651	F042665	PQHSAHRYGRPKTMTSPKMSFATLIMLSSVVTVVVTLGVIPLLTLTGVGPGWGLFFAPAAGMAAGYSAARWLGGYIDDK
Ga0222635_1041800	Ga0222635_10418001	F096357	MNKLLDHPIIKRLHRESSVTLTDLLDRKLFIEPPAEPCGYRHPSVWFLCYQEDLAQAEHERLRAARRQNPSLIHAAALVVAGATGKLSEEQKTMAFYFTRYVEAREYELDQLVRRSTGSHNSAEIRKEEAAERMETAHRLWLKLDTPERDRC
Ga0222635_1042200	Ga0222635_10422001	F014583	MTTRDTRRNFLRLLDQTWPGVRSEFVAAMRQARAGVDMKALEAAIARGDVDAAFRALRFDAADL
Ga0222635_1042518	Ga0222635_10425181	F054555	MNFPTKARDFVVGIDYDSIEEDKGHLTIRRTVTLPELVEEIKEIMLNGSRYPQFPPDANPSITYVWDLSNEEDGDCYHEIMFELEKDNRKEVKC
Ga0222635_1043033	Ga0222635_10430331	F056627	MANMQMVEQEIARIEERSTKRQIEAAKLLTNALSGDLRAKVALQEGISSSDIPTVLEPAINVIFLAQYAAEQVVWNQIADEHTADNFGTIRFGDFQVDPSALSSHAGEEFISGGLPAVGEYEEYPAVPFTTTQLDKDFEGKT
Ga0222635_1044442	Ga0222635_10444421	F010230	QFRQVWLKLVPSLVSINGNEVRLVQFRQVVLKVVPLLVSINGNEVRLVQLYQVWRKLVPLLVSINGNEVRLLQPPQVVSKLVPLLVSINGNEVRLLQFCQVELKLVLLLVSINGNELRLLQLYQAKLKLVPLLVSINANELRLVQSRQVELKLVPLLVSINGNELRLVQFCQVELK
Ga0222635_1045258	Ga0222635_10452581	F010230	VRLVQSRQVWVKLVPLLVSINGNELRLLQLFQVWLKLVPLLVLINGNELRLLQFRQVWLNLMPLLVSINGNELRLLQLYQVVSKLVPLLVSINGNEARLLQLYQVKPKLVPLLVSINGNELRLLQLYQV
Ga0222635_1052750	Ga0222635_10527501	F024490	PPDWSNTRVPAAIPDATSDTRMLSMLVSVRSVLVNASAKLPPFILSKALAGKLVRLVQFCQALLKLVPADVSMSGKLVRLLQLYHVA
Ga0222635_1056025	Ga0222635_10560251	F043706	NLLFMALDTGQPSVWLLILCAVAIIFAGGAENRGSGL
Ga0222635_1056666	Ga0222635_10566661	F020325	NWSDLKYEVADKLFGKELDEAYKMGMRIGAEYATSKLSFEVSLKRRLTLTKTEERGYDYAIAAVARIKPEIASQTGASV
Ga0222635_1060668	Ga0222635_10606682	F067269	SDASFFWDTTDSKKKRKGYRDGLKYDAVSGTKRTRYRGYDIVYTRLKNSNFCAHTIDVLGEGVGFEKNTLKSEDTEEVYAMLDEWIDNNNTNKTKTKTEQL
Ga0222635_1062144	Ga0222635_10621442	F063346	MYSTIYNKDKATRPPRLSEPTKGRSALSTARDDGQERLPHSTFDVERSMFDVQIVESEITTKPSYHVETTYTGQEF
Ga0222635_1062503	Ga0222635_10625031	F068453	TDYVAFMDTDDMYDKDYIGYSIFEMETNDKSIAGSADMIVVGYKGTLPIFYKQRCMFLHMLNEATLVFKKSLNPQFSSSNSNEAVPFLQKHLGDIIETNIDRLMCCIAHDHNTIPKKQWCDDKFKTNHLSQYNTHLQIISSINV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300023234: Saline water microbial communities from Ace Lake, Antarctica - #139

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences