3300023233: Saline water microbial communities from Ace Lake, Antarctica - #1400

Overview

Basic Information

• IMG/M Taxon OID: 3300023233
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0114820 | Gp0255788 | Ga0222696
• Sample Name: Saline water microbial communities from Ace Lake, Antarctica - #1400
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 144877168
• Sequencing Scaffolds: 24
• Novel Protein Genes: 24
• Associated Families: 16

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	13
All Organisms → cellular organisms → Bacteria	4
All Organisms → Viruses → Predicted Viral	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae → Marinobacter → unclassified Marinobacter → Marinobacter sp. G11	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria → unclassified Campylobacterota → Epsilonproteobacteria bacterium JGI 0002006-B18	3

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Saline Lake Microbial Communities From Various Lakes In Antarctica
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → saline lake → saline water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Hypersaline (saline)

Location Information

• Location: Antarctica: Ace Lake
• Coordinates
  • Lat. (^o): -68.4725
  • Long. (^o): 78.188
  • Alt. (m): N/A
  • Depth (m): 14

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000388	Metagenome / Metatranscriptome	1201	Y
F010230	Metagenome	306	Y
F018909	Metagenome / Metatranscriptome	232	Y
F031722	Metagenome	181	N
F035622	Metagenome / Metatranscriptome	171	Y
F039448	Metagenome / Metatranscriptome	163	Y
F042665	Metagenome	157	N
F063346	Metagenome	129	N
F065402	Metagenome	127	Y
F069520	Metagenome	123	Y
F077964	Metagenome	117	Y
F078142	Metagenome / Metatranscriptome	116	Y
F083694	Metagenome	112	Y
F091299	Metagenome	107	Y
F092080	Metagenome	107	Y
F096357	Metagenome	104	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0222696_1009902	Not Available	2009
Ga0222696_1010769	Not Available	1890
Ga0222696_1011618	All Organisms → cellular organisms → Bacteria	1787
Ga0222696_1017492	All Organisms → Viruses → Predicted Viral	1317
Ga0222696_1017774	Not Available	1302
Ga0222696_1020003	Not Available	1193
Ga0222696_1022752	All Organisms → cellular organisms → Bacteria	1083
Ga0222696_1022841	Not Available	1080
Ga0222696_1023332	All Organisms → Viruses → Predicted Viral	1062
Ga0222696_1023502	Not Available	1057
Ga0222696_1028004	Not Available	927
Ga0222696_1029860	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae → Marinobacter → unclassified Marinobacter → Marinobacter sp. G11	884
Ga0222696_1033795	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria → unclassified Campylobacterota → Epsilonproteobacteria bacterium JGI 0002006-B18	808
Ga0222696_1034817	All Organisms → cellular organisms → Bacteria	791
Ga0222696_1035871	Not Available	774
Ga0222696_1041726	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae → Marinobacter → unclassified Marinobacter → Marinobacter sp. G11	692
Ga0222696_1044372	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria → unclassified Campylobacterota → Epsilonproteobacteria bacterium JGI 0002006-B18	663
Ga0222696_1044805	Not Available	658
Ga0222696_1045542	Not Available	651
Ga0222696_1050765	Not Available	600
Ga0222696_1052098	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria → unclassified Campylobacterota → Epsilonproteobacteria bacterium JGI 0002006-B18	589
Ga0222696_1056379	Not Available	556
Ga0222696_1058549	All Organisms → cellular organisms → Bacteria	540
Ga0222696_1061885	Not Available	518

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0222696_1009902	Ga0222696_10099021	F031722	MHIDETATTQTPTQKVTKPRFYHEQAAAEKLGLSKETLRHWRVGYTVTSKGTRYTYPPKMKDGEGTTWKKEFPTKFSPILWDADFVDTL
Ga0222696_1010769	Ga0222696_10107696	F069520	MAEIDPQVFGGLIADVKTLMKQTERSREDQTVANNILFAKIDNLSANGCAVGAKLCSRVKSLEEKPAKLVAIGSMILAGLAVI
Ga0222696_1011618	Ga0222696_10116182	F077964	MKKLITIIAILFILSPAVAFCQTAESKSSPPTIQKIAPNSYYYNYNITEVQKEPEGGGEAETFYQYNYVKIKGKPTKRKVLDAIEAAESSTVTAEVEAVATERSTAKTQLADIAALSYAQVDNYVDNTFGNLPAAQKTALKKLYKTVLAMLKQMDLSE
Ga0222696_1017492	Ga0222696_10174922	F042665	MTSPKMSFATLIMLSSVVTVVVTLGVLPLLALTGVGPGWGLFFAPAAGMAAGYSAARWLGGYIDDK
Ga0222696_1017774	Ga0222696_10177742	F018909	MKWIKVAIGAVIAISVIPVIVTSVTALTGSGGDLESTVAGTLLDLAPLVFVASVLAFLFTKTGSAD
Ga0222696_1020003	Ga0222696_10200032	F042665	MTPPKLSFATLILLSSVVTVVVTLGVMPLLALTGVGHGWGLFFAPAAGMAAGYSAARWLGGYIDDK
Ga0222696_1022752	Ga0222696_10227521	F000388	MKVIKTTKEYFETEEEKVYFFEPLEKEISVEDMQKIVDANERLIKELKDGSNTISE
Ga0222696_1022841	Ga0222696_10228411	F010230	QVESKLVPLLVSINGNELRLVQLYQALGKSVTLLVSINGNELRLVQLYQVELKLMPLLVLINGNEVRLLQLSQVWKKLVPLLVSINAGNEVRLVQRVQVESKLVPLLVSINGNELRLVQLYQVELKLVPLLVLINGNEVRLLQLYQVWLKLMPLLVSINGNEVRLLQ
Ga0222696_1023332	Ga0222696_10233321	F035622	EDIMAKKGSCGGTPRVGKAGDNKPSRGRGAGRRRR
Ga0222696_1023502	Ga0222696_10235022	F039448	MKVNQAIELAMAKTLRKYAQMGEDVTVRAWRSLEADGSWKENPDRKFPMIDVRCSVPKPDDNESTLQVECAILMGTNTDDDKSHAFIVGMEDAVQDVCDTMFAQFRTGVFTGDELAYFLARVVAETSTDAFQFGGLTFGDGLAPADDNGINMIGITMIVHYGRSDF
Ga0222696_1028004	Ga0222696_10280042	F078142	MSFEIVAFNSVYSSITIARCQIRIGRTVIAKALCAGIGTLRENTDEGQLGSIDANVRLLATDEPDGEIKTGTVIEILQNGQDEKTGWVKARVGGRFPVGGLTRLALEAVNE
Ga0222696_1029860	Ga0222696_10298601	F096357	MNKLLDHPIIKRLHRESSVTLTDLIDRKVFIEPPAEPCGHIHPSAWFLCYQEDLAQAESERLRAARRQNPRLILAAALVVAGATGKLSEEQKNMAFYFTRYVEAHEYELVQLVRSRTGGVNTAEKRKEEAAERMETAHSRWLKLDTPERDKCAIIAKRMGCKVDTVREWRRKGWRSG
Ga0222696_1033795	Ga0222696_10337951	F010230	MPLLVLINGNEVRLLQFCQVEKKLVPLLVLINANEVRLLQLYQVWVKLVPLLVSINGNELRLLQLFQVWLKLVPLLVSINGNELRLVQSRQVETKPVPLLVLINGNELRLVQSRQVSLKLMPLLVSINGNEARLLQLYQ
Ga0222696_1034817	Ga0222696_10348171	F092080	EIWKNLRELQTMGKISSIQQAAVTSMDRFIESLKKGAEENQREAAKKRVLNVLVKEKPLGNWEDIHKERMEADADRS
Ga0222696_1035871	Ga0222696_10358712	F083694	MDKVERLKNRQLAKLLTHLERTGQLTVELEKDLKRAYRFAFEDVATLIQGLDLENKNVEN
Ga0222696_1041726	Ga0222696_10417261	F096357	MNKLLDHPIIKRLHRESSVTLTDLIDRKLFIEPPAEPCGHIHPSAWDLFYQEDLQPPESERLRAARKRNPRLILAAALVVASVTGKLSKEQKNMAFDFTRYVEAHEYELVQLVRSRTGGVNTAEKRKEEAAERMETAFSLWLKLDTPERDKCAIIGKRMGYKANTVRGWKRKGWRSG
Ga0222696_1044372	Ga0222696_10443721	F010230	KFNAGNDVNPHVCQVEIKVVPLLVSINGNELRLLQSRQVWLKLVPLLVSINGKELRLLQLVQVELKVVPLLVSINGNELRLLQLYQVKLKLVPLLVSINGNELRLVQSRQVELKVVPLLVSINGKELRLLQLIQVKLKLVPLLVSINGNELRLKHSRQVE
Ga0222696_1044805	Ga0222696_10448053	F031722	GAHQMHIDETTQTPTQKATKPRFYHEQAAAEKLGLSKETLRHWRVGYTVTSKGTRYTYPPKMKDGEGTTWKKEFPTKFSPILWDADFVDTLASALHTQRIAMGDLKQ
Ga0222696_1045542	Ga0222696_10455421	F091299	MKEEKEKDKLENITGSGIEVTIKGKEYKLGIFSMRDLADFRQYVKGQRVKIIQATIVSMEEKLILINSVLDSNVNETKELQTMDGVTFMLWRSLKKYQPELTLADVDDMIDLDNISEISNVLMNIGGKVKNSQKRAKKV
Ga0222696_1050765	Ga0222696_10507651	F031722	MDETATTQTPTPTQKVTKPRFYHEQAAAEKLGLSKETLRHWRVGYTVKSKGKRYTYPPKMKDGDGTTWKKEYPAKFSPILWDADFIDTLASALHTQRIVMGDLKQ
Ga0222696_1052098	Ga0222696_10520981	F010230	INANEVRLVQFRQVSRKLVPLLVSINGNELRLVQFRQAELKLVPLLVSINGNELRLLQLYQVWLKVVPLLVSINANEVRLLQSRQAKSKLVPLLVSINANEVRLVQFRQVSRKLVPLLVSINGNELRLLQLYQASRKLVPSLVSINGNELRLLQSRQVWAKLVPLLVSINGNELRLLQYHQADSKVVPLLVSINSN
Ga0222696_1056379	Ga0222696_10563792	F065402	MKKIIVGFQVYQDFKQRIIEAGKKYKIQGISNPLNISQFCRIAVTKLVSDIEEKGE
Ga0222696_1058549	Ga0222696_10585492	F063346	MNVEHRTSNVEHRIMYSTIYNKDKATRPPRLSEPTKGRRALSTARDDGQERLPHSTFDVERSMFTRLRRRQRRPGFDVQIVASEITTKPSYHVEITYTGQEF
Ga0222696_1061885	Ga0222696_10618853	F042665	KTMTSPKLSFATLIMLSSVVTVVVTLGVMPLLALTGSVAGLFFAPVAGMAAGYSTARWLGGYIDDK