3300023181: Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L194-509B-1

Overview

Basic Information

• IMG/M Taxon OID: 3300023181
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0095510 | Gp0290985 | Ga0247815
• Sample Name: Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L194-509B-1
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 760514773
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → agricultural field → plant litter
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.3
  • Long. (^o): -89.38
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003605	Metagenome / Metatranscriptome	477	Y
F056350	Metagenome / Metatranscriptome	137	Y
F103302	Metagenome / Metatranscriptome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0247815_10162945	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae	857
Ga0247815_10307195	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	561
Ga0247815_10325606	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	540

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0247815_10162945	Ga0247815_101629452	F003605	MAVGDDAIAAGYPLVPNTGEEGRVRWGAREINRTRDLIAGVLSTIPVGKAGYRTAAGITSGTLDPVNTDGQDGDIYIKTIG
Ga0247815_10307195	Ga0247815_103071952	F056350	LAXYQRNYFNLSIGNLIKYFSILTVAFHDVHSLFGFFILLVVFSQLISGTMLSFSLVPESMLVPIVRDEEDLEDLYTDDFFXLHERGVDLLFIFSXTHLFRKLYINAFEYEHEIAXKSGVFTFMILQVVTFFGLVLCC
Ga0247815_10325606	Ga0247815_103256062	F103302	MATQEYAASIQGVAIRVTRLDATGNLLNGPGDSYTTSAFMRVSFTPEYEEGDEITEK