3300023171: Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L169-409C-1

Overview

Basic Information

• IMG/M Taxon OID: 3300023171
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0095510 | Gp0290983 | Ga0247813
• Sample Name: Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L169-409C-1
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 786445810
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → Ferruginibacter → unclassified Ferruginibacter → Ferruginibacter sp.	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → agricultural field → plant litter
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.3
  • Long. (^o): -89.38
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034190	Metagenome / Metatranscriptome	175	Y
F034611	Metagenome / Metatranscriptome	174	Y
F092148	Metagenome	107	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0247813_10034686	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → Ferruginibacter → unclassified Ferruginibacter → Ferruginibacter sp.	2251
Ga0247813_10111767	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1089
Ga0247813_10170682	Not Available	842

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0247813_10034686	Ga0247813_100346862	F034611	MLQSKTVLSLTIDLLANNAFNHLKDEEISALHYLILKLQEPLTSIQQNLLLTFWNHAYTGDLPAALLYRCNTVLQQLGRSPLEELVMDMDMY
Ga0247813_10111767	Ga0247813_101117672	F092148	MIIKKKREDLSGKIKTALDKGIQKLIAETKATNSYIVVSDKNGKVKKIPAKDL
Ga0247813_10170682	Ga0247813_101706821	F034190	SHNNFTGTSRYRTRADKHSLHPDQCPLLSILPERIVPTPLHLFLGIGNRIILDAFSELLGNERVQEALKPITTIHSAGCGGKSDLHDLNGPEISKLVRQLDPEKGKSPLKVAASSSLPAATQATHSILTRWLENLHDHLLHKGEWTTKQLVDWRAAVDDIQQHWQSEAHSKPFPKLHMLRHSVEFAERHRFLGRASEAQIESFHASFNALFHKQHRNQSGNTAERLRRSLADAALRAVQPFLQQ