3300023111: Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA - Elk Dung E1

Overview

Basic Information

• IMG/M Taxon OID: 3300023111
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0116274 | Gp0272177 | Ga0233374
• Sample Name: Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA - Elk Dung E1
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 94045786
• Sequencing Scaffolds: 5
• Novel Protein Genes: 5
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → unclassified Lachnospiraceae → Lachnospiraceae bacterium	1
Not Available	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Fecal Eukaryotic Communites From Dung Pellets Of Tule Elk In California, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Elk Feces → Fecal Eukaryotic Communites From Dung Pellets Of Tule Elk In California, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: USA: California
• Coordinates
  • Lat. (^o): 38.04
  • Long. (^o): -122.5
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041521	Metagenome	159	Y
F058575	Metagenome / Metatranscriptome	134	Y
F072921	Metagenome / Metatranscriptome	120	Y
F080708	Metagenome	114	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0233374_1000276	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides	8261
Ga0233374_1007624	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → unclassified Lachnospiraceae → Lachnospiraceae bacterium	1254
Ga0233374_1040308	Not Available	567
Ga0233374_1044192	Not Available	542
Ga0233374_1044401	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia	541

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0233374_1000276	Ga0233374_10002761	F041521	MGGFLSFSNTNAQTTLENCLFAGKFEKGSNLTDEAFLGAFGTLRSVKAIKNCYYLADDGLAAVHSDSNLKPGSDNVEITAVTEDDLRNNTIATQLGTLWEQGENYPVIRR
Ga0233374_1007624	Ga0233374_10076241	F080708	TPRLTEVKCPKCGEYVEVFVRLGGRPGETGTLTSDEKCTCGHILSAGSYVTDYEQ
Ga0233374_1040308	Ga0233374_10403081	F072921	MKSKLSLSTDRKSVSEGEYIEIRWSCDACPDSLYLSIDSGCTQYSIAVSDSGTTRIPVPRSNGKMTIKLSGVISGKKVAESLEVRVQSVKSKAARAPLSSRLKLFKEKMQAKWYVFRAQLKYWWLSRKKWQKALWIALLAIWLGLLFSSIGR
Ga0233374_1044192	Ga0233374_10441921	F072921	TRTNFNHDLRHPSGCLRILSGKTIADIYCKQLFQPMKKKMKLSTDRKSASEGEYIEIRWACDACPDSLYLSIDSERTQYSIAVSDSGTTRIPVPKSNGKMTVKLIGVISGKKVIESVDVRVKSNKRARSKAPLSSRMKMFGEKMKAKWYVFRANIKYWWLSQKKWQKALWIALLALWLGM
Ga0233374_1044401	Ga0233374_10444012	F058575	MTAQELLNQAEALRRNNRFGEAINIYREAASATDATDDIRRKALASVELIQEINGFVNVDLLNP