3300023106: Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L104-311B-1

Overview

Basic Information

• IMG/M Taxon OID: 3300023106
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0095510 | Gp0290979 | Ga0247809
• Sample Name: Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L104-311B-1
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 653631646
• Sequencing Scaffolds: 6
• Novel Protein Genes: 6
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Rotaria	1
Not Available	3
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Polyangiaceae → unclassified Polyangiaceae → Polyangiaceae bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → agricultural field → plant litter
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.3
  • Long. (^o): -89.38
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034190	Metagenome / Metatranscriptome	175	Y
F045048	Metagenome / Metatranscriptome	153	Y
F051903	Metagenome / Metatranscriptome	143	Y
F063103	Metagenome / Metatranscriptome	130	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0247809_1076938	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Rotaria	1278
Ga0247809_1099974	Not Available	1083
Ga0247809_1140694	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina	875
Ga0247809_1184655	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Polyangiaceae → unclassified Polyangiaceae → Polyangiaceae bacterium	740
Ga0247809_1307396	Not Available	539
Ga0247809_1311604	Not Available	535

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0247809_1076938	Ga0247809_10769381	F051903	MCEEIATVRRKFQRIGTRRILVLDETHRRIGDVTERTIVLPGEPSTIETSATTHYAPRYDMIACCTSKEVMPPMIYAPKERGKGVDTEMLLQYIRNLLAQSAGALDRYPLFLMLDKSTIHNEGKIIETFHDWGCQELVEVIKMPTAAAKRLSPLDNSLFNVWRQRALNGPPLTRTNIKQRMSDAWNSITERDLLPQYRHCGLMRRQDVYFDCPNPAAHQHGS
Ga0247809_1099974	Ga0247809_10999741	F034190	DCRAVGLTPFVGESAAFPHIWAVLQHFIDTRSALLNGDWCFLNAVLGLMAPSATHPCPICIVSKSNLLSTSRYRTPADKHSIDRTHQPLLTIPPERIVPTPLHLFLGISNRIILDAFSELLGKERVEAALKSITTIHSAGCSGAADLHDLNGPEISKWIKKECSATLLSAAAAASAVTDAIAASHSTLTRWLQQLHHCLLRSGDWSAADIDAWRSVVSDIHQHWCAETSQKAFPKLHMLHHSIDFAERHRFLGRASEAQIESCHAFFNSLVHKQHRNQSGNTAERLRRCLADASLRAVQPLLQP
Ga0247809_1140694	Ga0247809_11406941	F045048	KYSIELFSKGSRASIPIGGHIAPNSTAGERALWKNVQNMAKKNKASDTINKPTPMFNPLCTDRVWLPK
Ga0247809_1184655	Ga0247809_11846552	F063103	PSRPIMKWFFGTFALVTAILFLCFVAWIATRVMHADQANYVVGRIMIYDLYAVAVIVSYSAFVGGWHLWEKLTGRMEAERAGDEPKAGGT
Ga0247809_1307396	Ga0247809_13073961	F034190	FSELFGQERLQSALTSITTIHSAGCSGKSDLYDLNGPEISKFIKKECSTSILAAAGATSTITDSVKASHSVLSRWLRQLHHALLHSGDWTAADIDAWRMAVDDIQRHWQAEACSKPFPQLHMLRHSVDFAERYRFLGRASEAQIESCHATLNALFHRQHRNQSGNVSERLRRSLADAAL
Ga0247809_1311604	Ga0247809_13116041	F034190	ISPERIVPTPLHVFLGISNRIIIDAFSELLGEKVVLEAVESIKTIHSAGCSGVSDLHELNGPEISKFIKRKRSTSALAAAGATSTITDSVKASHSVLSRWLHQLHHSLLHSGDWTAADIDAWRMAVDDIQRHWQSEARSKPFPKLHMLQHSVDFAERYRFLGRASEAQIESCHATFNA