3300023104: Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L044-104R-1

Overview

Basic Information

• IMG/M Taxon OID: 3300023104
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0095510 | Gp0290975 | Ga0247805
• Sample Name: Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L044-104R-1
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 655646112
• Sequencing Scaffolds: 2
• Novel Protein Genes: 2
• Associated Families: 2

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → agricultural field → plant litter
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.3
  • Long. (^o): -89.38
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002654	Metagenome / Metatranscriptome	539	Y
F034190	Metagenome / Metatranscriptome	175	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0247805_1019129	Not Available	2691
Ga0247805_1082372	Not Available	1188

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0247805_1019129	Ga0247805_10191292	F002654	MLNYQTYNDKVVCQKGNSPEQVFKVPKYLLSESEEVFKLYNQELGLEAAIF
Ga0247805_1082372	Ga0247805_10823721	F034190	VLGVTYSAAGKQHFAALLVYEGGDSWLELQDCRAVGLTPFVGESAAFPHIWAVLQHFIDTRSALLNGDWCFLNAVLGLMAPSATHPCPICIVSKSNLLSTSRYRTPADKHSIDRTHQPLLTIPPERIVPTPLHLFLGISNRIILDAFSELLGKERVEAALKSITTIHSAGCSGAADLHDLNGPEISKWIKKECSATLLSAAAAASAVTDAIAASHSTLTRWLQQLHHCLLRSGDWSAADIDAWRSVVSDIHQHWCAETSQKAFPKLHMLHHSIDFAERHRFLGRASEAQIESCHAFFNSLVHKQHRNQSGNTAERLRRCLADASLRAVQPLLQP